View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_30 (Length: 263)
Name: NF8469_low_30
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 30961471 - 30961729
Alignment:
| Q |
1 |
caaccttcccttaaaaattaggaatttcaagtttctttttcttccaaagttatttttcttccctatcctttcttgattatataatttctaagtcttcctc |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30961471 |
caaccttcctttaaaaattaggaatttcaagtttctttttcttccaaagttatttttcctccctatcctttcttgattatataatttctaagtcttcctc |
30961570 |
T |
|
| Q |
101 |
cattcctcctactactcctatactccctaggagcctcatcctcttccttctcatagtccttttgattagaggttgatgccttcacattaccctctcttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30961571 |
cattcctcctactactcctatactccctaggagcctcatcctcttccttctcatagtccttttgattagaggttgatgccttcacattaccctctcttca |
30961670 |
T |
|
| Q |
201 |
acaaaagtaattattcctttactcttcactaatcctcttaatcttcctctctgcttctc |
259 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||| |
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| T |
30961671 |
acaaaagtaattattcctttaatcttcactaatcctcttaatcttcctttgtgcttctc |
30961729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 38790660 - 38790437
Alignment:
| Q |
1 |
caaccttcccttaaaaattaggaatttcaagtttctttttcttccaaagttatttttcttcccta-------------tcctttcttgattatataattt |
87 |
Q |
| |
|
|||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||| |||||| |||||||||||||| || ||| |
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| T |
38790660 |
caaccttcccttaaaagtaaggaattt-aagtttctttttcttccaaagttattcttcctccctagagaccctaatcatcctttcttgattacatgtttt |
38790562 |
T |
|
| Q |
88 |
ctaagtcttcctccattcctcctactactcctatactccctaggagcctcatcctcttccttctcata--gtccttttga-ttagaggttgatgccttca |
184 |
Q |
| |
|
|||||||| ||| || |||||| ||| ||||||||| |||| |||||| ||||||| |||||| |||||||||| || |||||||||| ||||| |
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| T |
38790561 |
-taagtctttctcaatgtctcctatgcctc--atactcccttggagtctcatcatcttcctcctcatatagtccttttgacttggaggttgatgacttca |
38790465 |
T |
|
| Q |
185 |
cattaccctctcttcaacaaaagtaatt |
212 |
Q |
| |
|
||||||||| |||| ||| ||||||||| |
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|
| T |
38790464 |
cattaccctttctttaaccaaagtaatt |
38790437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 38784429 - 38784324
Alignment:
| Q |
1 |
caaccttcccttaaaaattaggaatttcaagtttctttttcttccaaagttatttttcttcccta----tcctttcttgattatataatttctaagtctt |
96 |
Q |
| |
|
||||||| |||||||| |||||||||| || |||||| |||||||||||||||| ||| || ||| |||||| ||||||| || |||||||||||| |
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| T |
38784429 |
caacctttccttaaaatttaggaattttaaatttcttgttcttccaaagttattcttcctctctaatcctcctttgttgattacat-gtttctaagtctt |
38784331 |
T |
|
| Q |
97 |
cctccat |
103 |
Q |
| |
|
||||||| |
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|
| T |
38784330 |
cctccat |
38784324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 34081627 - 34081577
Alignment:
| Q |
1 |
caaccttcccttaaaaattaggaatttcaagtttctttttcttccaaagtt |
51 |
Q |
| |
|
||||||||| || ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
34081627 |
caaccttcctttggaaattaggaattttaagtttctttttcttccaaagtt |
34081577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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