View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_33 (Length: 260)
Name: NF8469_low_33
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 22464984 - 22464750
Alignment:
| Q |
18 |
taatcattttacatctgcaaagaaggatgataatcatgtagaaaattctccaacacgtattgatcctaaagctagtgtatcagctatcacacatgagcaa |
117 |
Q |
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| T |
22464984 |
taatcattttacatctgcaaagaaggatgataatcatgtagaaaattctccaacacgtattgattctaaagctagtgtatcagctatcacacatgagcaa |
22464885 |
T |
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| Q |
118 |
tatgagaagttaatgtctttgattcaaggttcatctattaaccaaaattcaaccattgcatgcttctaatcatgtatctactttcatgtatgttggtctt |
217 |
Q |
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| T |
22464884 |
tatgagatgttaatgtctttgattcaaggttcatctattaaccaaaattcaaccattgcatgcttctaatcatgtatctactttcatgtatgttggtctt |
22464785 |
T |
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| Q |
218 |
tcaccatctgagaggcaaggtactagcttcatctc |
252 |
Q |
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| T |
22464784 |
tcaccatctgagaggcaaggtactagtttcatctc |
22464750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 33 - 243
Target Start/End: Complemental strand, 31036233 - 31036030
Alignment:
| Q |
33 |
tgcaaagaaggatgataatcatgtagaaaattctccaacacgtattgatcctaaagctagtgtatcagctatcacacatgagcaatatgagaagttaatg |
132 |
Q |
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| T |
31036233 |
tgcaaaggaggatgctaatcctgtagtaaactctccagcatgtgttgatcataaagttagtgtaccgtcaatcacacatgagcaatactagaagctaatg |
31036134 |
T |
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| Q |
133 |
tctttgattcaaggttcatctattaaccaaaattcaacca--ttgcatgcttctaatcatgtatctactttcatgtatgttggtctttcaccatctgaga |
230 |
Q |
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| T |
31036133 |
tctttgatttaagg---------taatcaaagttcagccaatgtgcatgcttctaatcaggtttcttcttccatgtctgctggtctttcaccatctgaca |
31036043 |
T |
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| Q |
231 |
ggcaaggtactag |
243 |
Q |
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| T |
31036042 |
gacaaggtactag |
31036030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 249
Target Start/End: Original strand, 2985274 - 2985442
Alignment:
| Q |
83 |
ctaaagctagtgtatcagctatcacacatgagcaatatgagaagttaatgtctttgattcaaggttcatctattaaccaaaattcaaccattg--catgc |
180 |
Q |
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| T |
2985274 |
ctaaagctactatttcagctatcacacatgagcaatatgaaaagttgatgtatttacttcagaattcatctctttatcaaggttcaaatgttgtacatgc |
2985373 |
T |
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| Q |
181 |
ttctaatcatgtatctactttcatgtatgttggtctttcaccatctgagaggcaaggtactagcttcat |
249 |
Q |
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| T |
2985374 |
ttctaatcaggtttcttcctccatctctcttggtcattcaccatctgacaggcaaggtactagtttcat |
2985442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 153
Target Start/End: Complemental strand, 19473807 - 19473752
Alignment:
| Q |
98 |
cagctatcacacatgagcaatatgagaagttaatgtctttgattcaaggttcatct |
153 |
Q |
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| T |
19473807 |
cagctatcacacataagcaaaatgagaggttaatgtctttacttcaaagttcatct |
19473752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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