View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_37 (Length: 248)
Name: NF8469_low_37
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 21054807 - 21055028
Alignment:
| Q |
19 |
acctgggtggtgtaggaaattcaacatcagtgctcgagagcttgaacaagatgtcgaaaaaggtaaattgcatggccgacaaagaaacttattgcatttt |
118 |
Q |
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| T |
21054807 |
acctgggtggtgtaggaaattcaacatcagtgctcgagagcttgaacaagatgtcgaaaaaggtaaattgcatggctgacaaagaaacttattgcatttt |
21054906 |
T |
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| Q |
119 |
actagaaatgctttgtcgcgagagaaagtatcttgaggcaagccaacttttggagcaaatgtcaattaaatcatattggccttgtgccaatacttacaat |
218 |
Q |
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| T |
21054907 |
actagaaatgctttgtcgcgagagaaagtatcttgaggcaagccaacttttggagcaaatgtcaattaaatcatattggccttgtgccaatacttacaat |
21055006 |
T |
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| Q |
219 |
tcgctcattgagggtctctgct |
240 |
Q |
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| T |
21055007 |
ttgctcattgagggtctttgct |
21055028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 26367105 - 26366898
Alignment:
| Q |
28 |
gtgtaggaaattcaacatcagtgctcgagagcttgaacaagatgtcgaaaaaggtaaattgcatggccgacaaagaaacttattgcattttactagaaat |
127 |
Q |
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||||||||||||| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26367105 |
gtgtaggaaattcgacgtcggtgctcgaaagcttgaacaagatgtcgaaaaaggtaaattgcatggccgacaaagaaacttattgcattttactagaaat |
26367006 |
T |
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| Q |
128 |
gctttgtcgcgagagaaagtatcttgaggcaagccaacttttggagcaaatgtcaattaaatcatattggccttgtgccaatacttacaattcgctcatt |
227 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||| || | |||||||| ||||||| |
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| T |
26367005 |
gctttgtcgcgagggaaagtatcttcaggcaagccaacttttggaacaaatgtcaattaaatcatattggccttctgcaaacagttacaatttgctcatt |
26366906 |
T |
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| Q |
228 |
gagggtct |
235 |
Q |
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| T |
26366905 |
gagggtct |
26366898 |
T |
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