View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_4 (Length: 454)
Name: NF8469_low_4
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 441
Target Start/End: Original strand, 24355056 - 24355486
Alignment:
| Q |
14 |
atatgcaccaccacatttga---gttttgttagttttaggaaagccaagttaggttttgagaccaagaaattggaatggaaaagaggaagaagagaagaa |
110 |
Q |
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| T |
24355056 |
atatgcaccaccacatttgatgagttttgttagttttaggaaagccaagttaggttttgagaccaagaaattggaatggaaaagaggaagaagagaagaa |
24355155 |
T |
|
| Q |
111 |
ttgagaaaatggagtgtgaagtgcactgcagaaggaatagatggaggaatgtttgtgggaaggaaaagtagagaaaatggtattgttgttagtattgctg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
24355156 |
ttgagaaaatggagtgtgaagtgcactgcagaaggaatagatggaggaatgtttgtgggaaggaaaagtagagaaaatggcattgttgttagtattcctg |
24355255 |
T |
|
| Q |
211 |
agaggtataaggttgtgttgttgttggcatgtgttatgtgtctttgtaatgctgatcgcgttgtcatgtcggttgctgttgttcctcttgctgctaaaca |
310 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24355256 |
agaggtataaggttgtgttattgttggcatgtgttatgtgtctttgtaacgctgaccgtgttgtcatgtcggttgctgttgttcctcttgctgctaaaca |
24355355 |
T |
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| Q |
311 |
tggttggtctagttctttccttggcattgttcaggtaccaataatattgattccaaatcttctgatcatgaatatacgtgttccgtgtccaacacatcta |
410 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24355356 |
tggttggtctagttcttttcttggcattgttcaggtaccaataatattgattccaaatcttctgatcatgaatatacgtgttccgtgtccaaaacatcta |
24355455 |
T |
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| Q |
411 |
gttatattcgatcgtgtgttttgtctgtgtc |
441 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
24355456 |
gttatattcgatcgtgtgttttgtctgtgtc |
24355486 |
T |
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