View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_42 (Length: 229)
Name: NF8469_low_42
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_42 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 36690 - 36476
Alignment:
| Q |
1 |
atatagccaactagagttaataggggaacttacaaaggcaccgaaagacatcttatagttggttatcaatttgccactcaagtagtaatcaacaaatgga |
100 |
Q |
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| T |
36690 |
atatagccaactagagttaataggggaacttacaaaggcaccgaaagacatcttatagttggttatcaatttgccactcaagtagtaatcaacaaatgga |
36591 |
T |
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| Q |
101 |
ccaatagtaagaagaaaaagagattgaatgggagcagtcttacttagcaattcaaaagatccaatcgaatatttcttttgaagagaacctatcgactgca |
200 |
Q |
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| T |
36590 |
ccaatagtaagaagaaaaagagattgaatgggagcagtcttacttagcaattcaaaagatccaatcgaatatttcttttgaagagaacctatcgactgca |
36491 |
T |
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| Q |
201 |
acacaaaggtgaaga |
215 |
Q |
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||||||||||||||| |
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| T |
36490 |
acacaaaggtgaaga |
36476 |
T |
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Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 8675665 - 8675837
Alignment:
| Q |
28 |
acttacaaaggcaccgaaagacatcttatagttggttatcaatttgccactcaagtagtaatcaacaaatggaccaatagtaagaagaaaaagagattga |
127 |
Q |
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|||||||| |||||| ||||||||||| ||||||||||||| |||||||| | |||||||||||||||||||||| | ||| |||| | |||| |||| |
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| T |
8675665 |
acttacaatggcaccagaagacatcttaaagttggttatcaacttgccactgagatagtaatcaacaaatggaccaagaataataagagagagagcttga |
8675764 |
T |
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| Q |
128 |
atgggagcagtcttacttagcaattcaaaagatccaatcgaatatttcttttgaagagaacctatcgactgca |
200 |
Q |
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|| |||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||| || ||||||| |
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| T |
8675765 |
ataggagcagtcttactcagcagttcaaaagatccaatcgaatatttcttttgcagagaaccgattgactgca |
8675837 |
T |
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