View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_47 (Length: 216)
Name: NF8469_low_47
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 42204988 - 42205165
Alignment:
| Q |
14 |
tttggtgttagctcccttacccttttaggtacttcttgtgtcggggtttatgatacttatatgctaaatttaaaataaataaaaaggacgaacgaacgaa |
113 |
Q |
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| T |
42204988 |
tttggtgttagctcccttacccttttaggtacttcttgtgtcggggtttatgatacttatatgctaaatttaa---aaaaaaaaagg----acgaacgaa |
42205080 |
T |
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| Q |
114 |
agcgaacacgaaggaaactaaattttcacttttgtgtgaattcatgtttgtatgaagatggacaaccgagacaaaactaactata |
198 |
Q |
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| T |
42205081 |
agcgaacacgaaggaaactaaattttcacttttgtgtgaattcatgtttgtatgaagaaggacaaccgagacaaaactaactata |
42205165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 435039 - 435109
Alignment:
| Q |
105 |
acgaacgaaagcgaacacgaaggaaactaaattttcacttttgtgtgaattcatgtttgtatgaagatggac |
176 |
Q |
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| T |
435039 |
acgaacgaaaga-aacacgaaggaaactgaatttttacttttgtgtgaattcatgtttgtatgaagaaggac |
435109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 20097165 - 20097099
Alignment:
| Q |
105 |
acgaacgaaagcgaacacgaaggaaactaaattttcacttttgtgtgaattcatgtttgtatgaaga |
171 |
Q |
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| T |
20097165 |
acgaacgaaagcgaacacgaaggaaactgaatttttacttttgtgtgaattcatgtttgtatgaaga |
20097099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 105 - 176
Target Start/End: Original strand, 47237300 - 47237371
Alignment:
| Q |
105 |
acgaacgaaagcgaacacgaaggaaactaaattttcacttttgtgtgaattcatgtttgtatgaagatggac |
176 |
Q |
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| T |
47237300 |
acgaatgaaaacgaacacgaacgaaattgaattttcacttttgtttgaattcatgtttgtatgaagaaggac |
47237371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 21266828 - 21266879
Alignment:
| Q |
117 |
gaacacgaaggaaactaaattttcacttttgtg--tgaattcatgtttgtat |
166 |
Q |
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| T |
21266828 |
gaacatgaaggaaactgaattttcatttttgtgtgtgaattcatgtttgtat |
21266879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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