View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8469_low_48 (Length: 214)
Name: NF8469_low_48
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_48 |
 | |
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| [»] scaffold0047 (1 HSPs) |
| | |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 48158264 - 48158434
Alignment:
| Q |
29 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatggattattcatcttctccatatca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48158264 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatggattattcatcttctccatatca |
48158363 |
T |
|
| Q |
129 |
aaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacacacgaaaatat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48158364 |
aaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacacacgaaaatat |
48158434 |
T |
|
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Target: chr7 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 41806780 - 41806950
Alignment:
| Q |
29 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatggattattcatcttctccatatca |
128 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41806780 |
aagaattaaatgattgagattaaaaatccttttttaaacaacacatgttccttactacatgatatcttgtttgtatggattattcatcttctccatatca |
41806879 |
T |
|
| Q |
129 |
aaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacacacgaaaatat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41806880 |
aaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacacacgaaaatat |
41806950 |
T |
|
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Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 29 - 190
Target Start/End: Complemental strand, 6090962 - 6090801
Alignment:
| Q |
29 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatggattattcatcttctccatatca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
6090962 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatagattattcatcttctccatatca |
6090863 |
T |
|
| Q |
129 |
aaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacaca |
190 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6090862 |
aaagtgcagattctaaataaaaaatatcatgttgaaagtgtatgcatcttgcagggaacaca |
6090801 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 4566572 - 4566633
Alignment:
| Q |
32 |
aattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatc |
94 |
Q |
| |
|
||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||| |||| |
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|
| T |
4566572 |
aattaaatgatcgagattaaaaatc-tcttttaaacaacacatgttccttgccacatggtatc |
4566633 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 6231486 - 6231649
Alignment:
| Q |
29 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatggattattcatcttctccatatca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6231486 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatggattattcatcttctccatatca |
6231585 |
T |
|
| Q |
129 |
aaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacacacga |
193 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
6231586 |
aaagtgcagattctaaatcaaaaatat-atgttgaaagtgtatgcatcttgtagggaacacacga |
6231649 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 29 - 199
Target Start/End: Original strand, 26033986 - 26034154
Alignment:
| Q |
29 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatggattattcatcttctccatatca |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26033986 |
aagaattaaatgattgagattaaaaaccctcttttaaa--atacatgttccttgctacatgatatcttgtttgtatggattattcatcttctccatatca |
26034083 |
T |
|
| Q |
129 |
aaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacacacgaaaatat |
199 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26034084 |
aaagtgcggattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacacacgaaaatat |
26034154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 31211 - 31375
Alignment:
| Q |
29 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatggattattcatcttctccatatca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
31211 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatgaattattcatcttatccatatca |
31310 |
T |
|
| Q |
129 |
aaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacacacga |
193 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
31311 |
aaagtgcagattctaaaacaaaaatatcatgttgaaattgtatgcatcttgcagggaacacacga |
31375 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 149; Significance: 7e-79; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 29 - 193
Target Start/End: Complemental strand, 5322 - 5158
Alignment:
| Q |
29 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatggattattcatcttctccatatca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
5322 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatgaattattcatcttatccatatca |
5223 |
T |
|
| Q |
129 |
aaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacacacga |
193 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5222 |
aaagtgcagattctaaaacaaaaatatcatgttgaaattgtatgcatcttgcagggaacacacga |
5158 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 29 - 193
Target Start/End: Original strand, 14834377 - 14834541
Alignment:
| Q |
29 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatggattattcatcttctccatatca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
14834377 |
aagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatgaattattcatcttatccatatca |
14834476 |
T |
|
| Q |
129 |
aaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacacacga |
193 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
14834477 |
aaagtgcagattctaaaacaaaaatatcatgttgaaattgtatgcatcttgcagggaacacacga |
14834541 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 24 - 199
Target Start/End: Complemental strand, 52106174 - 52105999
Alignment:
| Q |
24 |
gagagaagaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatcttgtttgtatggattattcatcttctcca |
123 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || |
|
|
| T |
52106174 |
gagataagaattaaataattgagattaaaaattctcttttaaacaacatatgttccttgctacatgatatcttgtttgtatagattattcatcttcttca |
52106075 |
T |
|
| Q |
124 |
tatcaaaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgcagggaacacacgaaaatat |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
52106074 |
tatcaaaagtgcagattctaaatcaaaaatatcatgttgaaagtgtatgcatcttgtagggaacacacgaaaatat |
52105999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 39111185 - 39111248
Alignment:
| Q |
30 |
agaattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatc |
94 |
Q |
| |
|
||||||||||||| |||||||||| | |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
39111185 |
agaattaaatgatcgagattaaaagtc-tcttttaaacaacacatgttccttgccacatggtatc |
39111248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 25092067 - 25092099
Alignment:
| Q |
46 |
gattaaaaaccctcttttaaacaacacatgttc |
78 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |
|
|
| T |
25092067 |
gattaaaagccctcttttaaacaacacatgttc |
25092099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 41413673 - 41413734
Alignment:
| Q |
32 |
aattaaatgattgagattaaaaaccctcttttaaacaacacatgttccttgctacatgatatc |
94 |
Q |
| |
|
||||||||||| |||||||||| | |||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
41413673 |
aattaaatgatcgagattaaaagtc-tcttttaaacaacacatgttccttgccacatggtatc |
41413734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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