View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8469_low_49 (Length: 211)

Name: NF8469_low_49
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8469_low_49
NF8469_low_49
[»] chr6 (5 HSPs)
chr6 (43-199)||(30836383-30836539)
chr6 (47-167)||(21762038-21762158)
chr6 (47-140)||(826693-826786)
chr6 (43-102)||(20915996-20916055)
chr6 (70-137)||(31442556-31442623)
[»] chr5 (4 HSPs)
chr5 (43-199)||(31981805-31981960)
chr5 (43-101)||(22780060-22780117)
chr5 (74-132)||(6697978-6698036)
chr5 (70-102)||(9045162-9045194)
[»] chr8 (2 HSPs)
chr8 (43-192)||(3193085-3193232)
chr8 (43-102)||(26083915-26083974)
[»] chr3 (7 HSPs)
chr3 (43-183)||(1141756-1141897)
chr3 (43-167)||(52041318-52041442)
chr3 (43-167)||(42655785-42655909)
chr3 (51-167)||(22424304-22424420)
chr3 (43-166)||(39484743-39484867)
chr3 (43-97)||(15996384-15996437)
chr3 (43-167)||(1529177-1529302)
[»] chr4 (3 HSPs)
chr4 (43-167)||(9451254-9451378)
chr4 (43-162)||(24257715-24257835)
chr4 (43-101)||(6898752-6898810)
[»] chr2 (7 HSPs)
chr2 (47-167)||(29280101-29280221)
chr2 (47-167)||(22625320-22625441)
chr2 (43-156)||(38955785-38955898)
chr2 (43-167)||(38996454-38996578)
chr2 (43-162)||(10601238-10601355)
chr2 (43-99)||(21922346-21922402)
chr2 (70-118)||(32281525-32281573)
[»] chr1 (3 HSPs)
chr1 (43-156)||(22964019-22964132)
chr1 (43-121)||(3908809-3908887)
chr1 (70-118)||(15700760-15700808)
[»] chr7 (5 HSPs)
chr7 (43-101)||(48850738-48850795)
chr7 (43-98)||(39742297-39742352)
chr7 (43-120)||(6253393-6253470)
chr7 (70-102)||(4407816-4407848)
chr7 (70-102)||(20077341-20077373)


Alignment Details
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 43 - 199
Target Start/End: Complemental strand, 30836539 - 30836383
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcgg 142  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  30836539 aaagcttgtctgatcaagcaattgttcaccctaattttaatctaatattttccctccatcccccaagcatttaattttcatgagtgctttccctactcag 30836440  T
Q  143 caagctaagttcaatttttaaattttcttccaagcatacatagaagtgtgcttctat 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30836439 caagctaagttcaatttttaaattttcttccaagcatacatagaagtgtgcttctat 30836383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 21762038 - 21762158
Alignment:
Q  47 cttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcggcaag 146  Q
    ||||||||||||||| |||| ||||||||||||||| ||| ||||||||||||||| | |||  ||||||||||| | |||||||| |||||||  ||||    
T  21762038 cttgtctgatcaagctattgctcaccctaattttaacctactattttccctccatcacccaattatttaattttcgttagtgcttttcctactcatcaag 21762137  T
Q  147 ctaagttcaatttttaaattt 167  Q
    |||||||||||||||||||||    
T  21762138 ctaagttcaatttttaaattt 21762158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 47 - 140
Target Start/End: Complemental strand, 826786 - 826693
Alignment:
Q  47 cttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactc 140  Q
    |||||||| |||||| |||||||||| ||||||||| ||||||||||||||||||| | ||| |||||||||||| | |||||||| |||||||    
T  826786 cttgtctggtcaagctattgttcaccttaattttaacctaatattttccctccatcgcccaatcatttaattttcgttagtgcttttcctactc 826693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 20916055 - 20915996
Alignment:
Q  43 aaagcttgtctgatcaagcaat-tgttcaccctaattttaaactaatattttccctccatc 102  Q
    |||||||||||||||||||||| || | ||| ||||||||| |||||||||||||||||||    
T  20916055 aaagcttgtctgatcaagcaatatgat-accttaattttaacctaatattttccctccatc 20915996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 137
Target Start/End: Original strand, 31442556 - 31442623
Alignment:
Q  70 accctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttcccta 137  Q
    ||||||||||||| |||||||||||||||||||   |||||||| |||| || | |||||||| ||||    
T  31442556 accctaattttaacctaatattttccctccatcatccaagcattaaattctcctaagtgcttttccta 31442623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 43 - 199
Target Start/End: Original strand, 31981805 - 31981960
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcgg 142  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||| |    
T  31981805 aaagcttgtttgatcaagcaattgttcaacctaattttaacctaatattttccctacatcc-tcaagcatttaattttcatgagtgcttttcctactcag 31981903  T
Q  143 caagctaagttcaatttttaaattttcttccaagcatacatagaagtgtgcttctat 199  Q
    ||||||||||| ||||||||||||  |||| ||||||||||||  ||||||||||||    
T  31981904 caagctaagtttaatttttaaattcccttcgaagcatacataggcgtgtgcttctat 31981960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 22780117 - 22780060
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccat 101  Q
    ||||||||||||||||||| |||||| |||||||| |||| ||||| ||||||||||||    
T  22780117 aaagcttgtctgatcaagctattgtttaccctaatcttaacctaat-ttttccctccat 22780060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 6697978 - 6698036
Alignment:
Q  74 taattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgcttt 132  Q
    ||||||||| |||||||||||||||||||   |||||||| |||| || ||||||||||    
T  6697978 taattttaacctaatattttccctccatcatgcaagcattaaattctcttgagtgcttt 6698036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 9045162 - 9045194
Alignment:
Q  70 accctaattttaaactaatattttccctccatc 102  Q
    ||||||||||||| |||||||||||||||||||    
T  9045162 accctaattttaacctaatattttccctccatc 9045194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 192
Target Start/End: Complemental strand, 3193232 - 3193085
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcgg 142  Q
    |||||||||||| ||||| |||| |||| | ||||||||| |||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||| |    
T  3193232 aaagcttgtctggtcaagtaattattcatcttaattttaacctaatattttccctccattcc-caaacatttaattttcatgagtgcttttcctactcag 3193134  T
Q  143 caagctaagttcaatttttaaattttcttccaagcatacatagaagtgtg 192  Q
    |||||||| |||||||||| ||||||||| ||||||||||||||||||||    
T  3193133 caagctaatttcaattttt-aattttctttcaagcatacatagaagtgtg 3193085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 26083915 - 26083974
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatc 102  Q
    |||||||||||| |||||||||     ||||||||||||| |||||||||||||||||||    
T  26083915 aaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatc 26083974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 183
Target Start/End: Original strand, 1141756 - 1141897
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcgg 142  Q
    ||||||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| ||| |||||||      
T  1141756 aaagcttgtttggtcaagcaattgttcactctaattttaatctaatattttccctccatcccccaagcatttaattttcattagtgtttttcctactcaa 1141855  T
Q  143 caagctaagttcaatttttaaattt-tcttccaagcatacat 183  Q
    |||||| ||||||||||||||||||  |||||||||||||||    
T  1141856 caagctgagttcaatttttaaatttcccttccaagcatacat 1141897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 52041442 - 52041318
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcgg 142  Q
    |||||||||||| |||||| |||||||||||||||||||| |||||||||||| |||||| | |||||||||||||||  | |||||||| |||||||      
T  52041442 aaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccttccatcacccaagcatttaattttggttagtgcttttcctactcat 52041343  T
Q  143 caagctaagttcaatttttaaattt 167  Q
    |||||||||||||||||||||||||    
T  52041342 caagctaagttcaatttttaaattt 52041318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 42655785 - 42655909
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcgg 142  Q
    |||||||||||| |||||| ||||||||||||||||||||  ||||||||||||| |||| | ||||||||||||||| || |||| ||| |||||||      
T  42655785 aaagcttgtctggtcaagctattgttcaccctaattttaacataatattttcccttcatcacccaagcatttaattttgattagtgtttttcctactcat 42655884  T
Q  143 caagctaagttcaatttttaaattt 167  Q
    |||||||||||||||||||||||||    
T  42655885 caagctaagttcaatttttaaattt 42655909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 22424420 - 22424304
Alignment:
Q  51 tctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcggcaagctaa 150  Q
    |||| |||||| |||||||||||||||||||| ||||||||||||||||||| |  || |||||||||||  | ||| |||| |||||||   |||||||    
T  22424420 tctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacctaaacatttaatttttgttagtacttttcctactcattaagctaa 22424321  T
Q  151 gttcaatttttaaattt 167  Q
    ||| ||||||| |||||    
T  22424320 gttgaatttttgaattt 22424304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 43 - 166
Target Start/End: Complemental strand, 39484867 - 39484743
Alignment:
Q  43 aaagcttgtctgatcaagcaat-tgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcg 141  Q
    ||||||||| || |||||| || ||||||||||| |||||| ||||||||||||||||||| | ||| ||||||||||| || | |||||| |||||||     
T  39484867 aaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatcacccaaacatttaattttaattaatgcttttcctactca 39484768  T
Q  142 gcaagctaagttcaatttttaaatt 166  Q
     |   ||||||||||||||||||||    
T  39484767 tctttctaagttcaatttttaaatt 39484743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 15996437 - 15996384
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccct 97  Q
    ||||||||||||||||||| |||||| ||||||||| ||| ||||| ||||||||    
T  15996437 aaagcttgtctgatcaagctattgtttaccctaattctaacctaat-ttttccct 15996384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 1529177 - 1529302
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaatt-ttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcg 141  Q
    ||||||||| || |||||| |||  | ||||||||| |||| ||||| |||||||||||||   |||||| |||||| || | | || ||| |||||||     
T  1529177 aaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctccatcatacaagcaattaattctcgttaatgtttttcctactca 1529276  T
Q  142 gcaagctaagttcaatttttaaattt 167  Q
     ||| |||||||||| ||||||||||    
T  1529277 tcaaactaagttcaaattttaaattt 1529302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 9451254 - 9451378
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcgg 142  Q
    |||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||| | |||||||| | |||||      
T  9451254 aaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaagcatttaattttcgttagtgcttttcgtactcat 9451353  T
Q  143 caagctaagttcaatttttaaattt 167  Q
    |||||||||||||||||||||||||    
T  9451354 caagctaagttcaatttttaaattt 9451378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 24257715 - 24257835
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagca-tttaattttcatgagtgctttccctactcg 141  Q
    ||||||||| || ||||||||||||||||||||||||||| |||||||||| |||||||| |  ||||| ||||||| |  |  ||||||| |||| ||     
T  24257715 aaagcttgtttggtcaagcaattgttcaccctaattttaacctaatatttttcctccatcacctaagcattttaattgtagttggtgcttttcctaatca 24257814  T
Q  142 gcaagctaagttcaattttta 162  Q
     ||| ||||||||||||||||    
T  24257815 tcaaactaagttcaattttta 24257835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 101
Target Start/End: Complemental strand, 6898810 - 6898752
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccat 101  Q
    ||||||||| ||||||||| |||| | |||||||| |||| |||||||||||| |||||    
T  6898810 aaagcttgtttgatcaagctattggtaaccctaatcttaacctaatattttccgtccat 6898752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 9e-29; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 29280101 - 29280221
Alignment:
Q  47 cttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcggcaag 146  Q
    |||||||||| |||| |||||||||||||||||||| ||||||||||||||| ||| |  |||||| |||||||| | |||||||| | |||||  ||||    
T  29280101 cttgtctgatgaagctattgttcaccctaattttaacctaatattttccctcaatcacctaagcatgtaattttcgttagtgcttttcgtactcatcaag 29280200  T
Q  147 ctaagttcaatttttaaattt 167  Q
    |||||||||||||||||||||    
T  29280201 ctaagttcaatttttaaattt 29280221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 167
Target Start/End: Complemental strand, 22625441 - 22625320
Alignment:
Q  47 cttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaatttt---catgagtgctttccctactcggc 143  Q
    |||||||| |||||||||||   ||||||||||||| ||||||||||||||||||| | | | |||||||||||   ||| |||||||| ||||||| ||    
T  22625441 cttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatcaccccatcatttaatttttgacat-agtgcttt-cctactcagc 22625344  T
Q  144 aagctaagttcaatttttaaattt 167  Q
    ||| | ||||||||||||||||||    
T  22625343 aagttgagttcaatttttaaattt 22625320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 38955898 - 38955785
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcgg 142  Q
    ||||||| ||||||||| | |||| | ||||||||| ||| ||||||||||||||||||| | |||||||||||||||  | | |||||| ||||||| |    
T  38955898 aaagcttatctgatcaaactattgataaccctaattctaacctaatattttccctccatcacccaagcatttaatttttgttaatgcttttcctactcag 38955799  T
Q  143 caagctaagttcaa 156  Q
    |||| |||| ||||    
T  38955798 caaggtaagctcaa 38955785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 38996578 - 38996454
Alignment:
Q  43 aaagcttgtctgatcaagcaat-tgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcg 141  Q
    ||||||||||||||||||| || |||| ||||||||||||| |||||||||||||||||||   ||| ||||||||| |  | |||| ||| |||||||     
T  38996578 aaagcttgtctgatcaagctatatgtt-accctaattttaacctaatattttccctccatcaaacaaacatttaattctgcttagtgtttttcctactca 38996480  T
Q  142 gcaagctaagttcaatttttaaattt 167  Q
     |||| ||||||||| ||||||||||    
T  38996479 tcaagttaagttcaaattttaaattt 38996454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 10601355 - 10601238
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcgg 142  Q
    |||||||||||  ||||||||||||| | ||||||| |||  |||| ||||||| ||||| |  ||||||||||||||  | |||| ||| ||||||| |    
T  10601355 aaagcttgtcttgtcaagcaattgtttaacctaattctaacataatcttttccc-ccatcacctaagcatttaatttttgttagtg-ttttcctactcag 10601258  T
Q  143 caagctaagttcaattttta 162  Q
    ||| ||||||||||||||||    
T  10601257 caatctaagttcaattttta 10601238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 21922346 - 21922402
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctcc 99  Q
    ||||||||||||||||||| ||   | |||||||| |||| ||||||||||||||||    
T  21922346 aaagcttgtctgatcaagctataacttaccctaatcttaacctaatattttccctcc 21922402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 32281525 - 32281573
Alignment:
Q  70 accctaattttaaactaatattttccctccatccctcaagcatttaatt 118  Q
    ||||||||||||| ||| ||||||||||||||||  |||||||| ||||    
T  32281525 accctaattttaacctagtattttccctccatcctacaagcattaaatt 32281573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 22964019 - 22964132
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttcatgagtgctttccctactcgg 142  Q
    |||||||||||| |||||| |||| | ||||||||| ||| |||||||||||||||||||   |||||||||||||||  | |||||||| ||||||| |    
T  22964019 aaagcttgtctggtcaagctattggtaaccctaattctaacctaatattttccctccatcaaccaagcatttaatttttgttagtgcttttcctactcag 22964118  T
Q  143 caagctaagttcaa 156  Q
    |||| |||| ||||    
T  22964119 caaggtaagctcaa 22964132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 3908887 - 3908809
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaattttc 121  Q
    ||||||||||||||||||| |||| | ||||||||||||| ||| |||||||||| ||||   ||| ||||||||||||    
T  3908887 aaagcttgtctgatcaagctattggtaaccctaattttaacctactattttcccttcatcatccaaacatttaattttc 3908809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 15700760 - 15700808
Alignment:
Q  70 accctaattttaaactaatattttccctccatccctcaagcatttaatt 118  Q
    ||||||||||||| ||| ||||||||||||||||  |||||||| ||||    
T  15700760 accctaattttaacctagtattttccctccatcctacaagcattaaatt 15700808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 48850738 - 48850795
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccat 101  Q
    ||||||||||||||||||| |||||| |||||||| |||| ||||| ||||||||||||    
T  48850738 aaagcttgtctgatcaagctattgtttaccctaatcttaacctaat-ttttccctccat 48850795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 39742352 - 39742297
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctc 98  Q
    ||||||||| ||||||||| |||| | |||||||| |||| |||||||||||||||    
T  39742352 aaagcttgtttgatcaagctattgataaccctaatcttaacctaatattttccctc 39742297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 6253393 - 6253470
Alignment:
Q  43 aaagcttgtctgatcaagcaattgttcaccctaattttaaactaatattttccctccatccctcaagcatttaatttt 120  Q
    ||||||||| | |||||||||||||| | ||||||| ||| ||||  ||||||||||||| |  || |||||||||||    
T  6253393 aaagcttgtttaatcaagcaattgtttaacctaattctaacctaaatttttccctccatcacctaaacatttaatttt 6253470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 4407816 - 4407848
Alignment:
Q  70 accctaattttaaactaatattttccctccatc 102  Q
    ||||||||||||| |||||||||||||||||||    
T  4407816 accctaattttaacctaatattttccctccatc 4407848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 20077373 - 20077341
Alignment:
Q  70 accctaattttaaactaatattttccctccatc 102  Q
    ||||||||||||| |||||||||||||||||||    
T  20077373 accctaattttaacctaatattttccctccatc 20077341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University