View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_6 (Length: 442)
Name: NF8469_low_6
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 281
Target Start/End: Complemental strand, 30855516 - 30855256
Alignment:
| Q |
19 |
gaagtctaagatttggcaaatcgaaatatgtaaaaattggagtgtgttaggattcttagcatctcatatttgtttgttagattataagcttgcaccaaat |
118 |
Q |
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| T |
30855516 |
gaagtctaagatttggcaaatcggaatatgtaaaaaattgagcgtgttaggattcttagcatctcatatttgtttgttagatcataagcttgcaccaaat |
30855417 |
T |
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| Q |
119 |
gctagacatacaagttaattcattgatcctacttaagaatattaatcnnnnnnngattaagactaaagaatatattaatctaatttatcagctttctcat |
218 |
Q |
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| T |
30855416 |
gctagacatacaagttaattcattgatcctacttaagaatattaatctttttttgattaagactaaaga--atattaatctaatttatcagctttctcat |
30855319 |
T |
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| Q |
219 |
ttttgattcctaatcttcatgatgccttgtccaaagatataaaaccattgtaacattttaccc |
281 |
Q |
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| T |
30855318 |
ctttgattcctaatctccatgatgccttgtccaaaaatataaaaccattgtaacattttaccc |
30855256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 359 - 425
Target Start/End: Complemental strand, 30855178 - 30855112
Alignment:
| Q |
359 |
catgatgttcgtgttagccaaataacttagttgggtacttttttaaaaagatgatttgtaattttgt |
425 |
Q |
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| T |
30855178 |
catgatgttcgtgttagccaaataacttagttgggtacttttttaaaaagatgatttgtaattttgt |
30855112 |
T |
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