View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_8 (Length: 427)
Name: NF8469_low_8
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 218 - 421
Target Start/End: Original strand, 53968967 - 53969171
Alignment:
| Q |
218 |
tatcagataaaat-ttgggcattgctaataaagtacgacgactagatacttaattttatgattttggaatgtnnnnnnnnnntaataatacttgtaacgg |
316 |
Q |
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| T |
53968967 |
tatcagataaattattgggcattgctaataaagtacgacgactagatacttaattttatgattttggaatgtaaaaaaaaaaaaataatacttgtaacgg |
53969066 |
T |
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| Q |
317 |
tacatgaaagatgtgacgcttttatagctgtcttggagaacacaaaatatccgagtaggatcattttggcagaattgttacatgcattgcaagcacaaca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53969067 |
tacatgaaagatgtgacgcttttatagctgtcttggagaacacaaaatatccgagtaggatcattttggcagaattgttacatgcattgcaagcacaaga |
53969166 |
T |
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| Q |
417 |
ccaaa |
421 |
Q |
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||||| |
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| T |
53969167 |
ccaaa |
53969171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 53968676 - 53968836
Alignment:
| Q |
18 |
ggaagaaatgtttcttggctaccatcaaaatcccacaatgcatccagatgaagattcataaagaaaa---ataaatcaagaaggcaaacaagtaaagatg |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53968676 |
ggaagaaatgtttcttggctaccatcaaaatcccacaatgcatccagatgaagattcataaagaaaaaaaataaatcaagaaggcaaacaagtaaagatg |
53968775 |
T |
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| Q |
115 |
tgattgtttgcaagtgtctcataactgtcttcactcttcaccataatcacgactctcaaca |
175 |
Q |
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| T |
53968776 |
tgattgtttgcaagtgtctcataactgtcttcactcttcaccataatcacgaccctcaaca |
53968836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 53968918 - 53968946
Alignment:
| Q |
189 |
taagagagttcgagttacaaagaatgaag |
217 |
Q |
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| T |
53968918 |
taagagagttcgagttacaaagaatgaag |
53968946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 28435319 - 28435260
Alignment:
| Q |
300 |
aataatacttgtaacggtacatgaaagatgtgacgcttttatagctgtcttggagaacac |
359 |
Q |
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|||||| |||||||| ||| |||||||| ||| ||||||||||||| |||||||||||| |
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| T |
28435319 |
aataattcttgtaacaatacgtgaaagatatgaagcttttatagctgccttggagaacac |
28435260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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