View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8469_low_9 (Length: 423)
Name: NF8469_low_9
Description: NF8469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8469_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 13687340 - 13687744
Alignment:
| Q |
1 |
gaataaacaggtgctacatgaccatcaaagcaaaagatcttatgtccatccaaattccatacctgtatgtatcattctcaatatattaataattaaaaat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13687340 |
gaataaacaggtgctacatgaccatcaaagctaaagatcttatgtccatccaaattccatacctgtatgtatcattctcaatatattaataattaaaaat |
13687439 |
T |
|
| Q |
101 |
acattcaaatagctacactcgatctattataaactagaaacttttgtcaccttaattaacttatcatctccacaagttacaacacatagctgannnnnnn |
200 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13687440 |
acattcaaatagctacacacgatctattataaactagaaacttttgtcaccttaattaacttatcatctccacaagttacaacacatagctgattttttt |
13687539 |
T |
|
| Q |
201 |
naaatgaaaatgccaagtcattaacaccaccatcatgagcatcaatctgtaataatgaaacaaagacattattaatcaagagttaaaaacattaaaattg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13687540 |
taaatgaaaatgccaagtcattaacaccaccatcatgagcatcaatctgtaataatgaaacaaagacattattaatcaagagttaaaaacattaaaattg |
13687639 |
T |
|
| Q |
301 |
tattagaatcatctnnnnnnnttaatttcaaaatacctccaaatgctcctgtagtccattatggacatgataggtatataaatgaatcaaatgttttgca |
400 |
Q |
| |
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||| ||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13687640 |
tatcagattcatctaaaaaaattaatttcaaaatacctccaaatgctcctgtaagccattatggacttgataggtatataaatgaatcaaatgttttgca |
13687739 |
T |
|
| Q |
401 |
aaagc |
405 |
Q |
| |
|
||||| |
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| T |
13687740 |
aaagc |
13687744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 61 - 405
Target Start/End: Original strand, 13640385 - 13640729
Alignment:
| Q |
61 |
acctgtatgtatcattctcaatatattaataattaaaaatacattcaaatagctacactcgatct-attataaactagaaacttttgtcaccttaattaa |
159 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| | |||| |||||||| ||||||||||||||||||||||||| |
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| T |
13640385 |
acctgtatgtatcattcccaatat-ttaataattaaaaatacattcatgtagctacatacaatcttattataaattagaaacttttgtcaccttaattaa |
13640483 |
T |
|
| Q |
160 |
cttatcatctccacaagttacaacacatagctgannnnnnnnaaatgaaaatgccaagtcattaacaccaccatcatgagcatcaatctgtaataatgaa |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
13640484 |
cttatcatctccacaagttacaacacatagctgattttttttaaatgaaaatgctaagtcattaacatcaccatcatgagcatcaatctgtaataattaa |
13640583 |
T |
|
| Q |
260 |
acaaagacattattaatcaagagttaaaaacattaaaattgtattagaatcatctnnnnnnnttaatttcaaaatacctccaaatgctcctgtagtccat |
359 |
Q |
| |
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| ||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||||||||||||||||||| ||||| |||| |
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| T |
13640584 |
atcaagacattattaatcaagagttaaaaaatttaaaattgtattagattcatctgaaaaaaattatttcaaaatacctccaaatgctcttgtaggccat |
13640683 |
T |
|
| Q |
360 |
tatggacatgataggtatataaatgaatcaaatgttttgcaaaagc |
405 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
13640684 |
tatgaacttgataggtatataaatgaatcaaatgttttgcaaaagc |
13640729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 13631556 - 13631801
Alignment:
| Q |
5 |
aaacaggtgctacatgaccatcaaagcaaaagatcttatgtccatccaaattccatacctgtatgtatcattctcaatatattaataattaaaaatacat |
104 |
Q |
| |
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||||||| |||||||| || ||||||| ||||||||||| ||||| ||||| |||||||| ||||||||| ||| ||||||||| ||||| | |||| |
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| T |
13631556 |
aaacaggagctacatggccttcaaagctaaagatcttatctccattcaaatcccatacctatatgtatcactcttcgaatattaatatttaaagaaacat |
13631655 |
T |
|
| Q |
105 |
tcaaatagctacactcgatctattataaactag-aaactttt--gtcaccttaattaacttatcatctccacaagttacaacacatagctgannnnnnnn |
201 |
Q |
| |
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||| ||| |||| || ||||||| ||||| |||||| | | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13631656 |
tcatatat-taca----atatattatagactaggaaacttctcggccaccttaattaacttatcatctccacaagttacaacacatagctgattttttgg |
13631750 |
T |
|
| Q |
202 |
aaatgaaaatgccaagtcattaacaccaccatcatgagcatcaatctgtaa |
252 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13631751 |
aactgaaaatgccaagtcattaacaccaccatcatgagcatcaatctgtaa |
13631801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 27536605 - 27536497
Alignment:
| Q |
145 |
tgtcaccttaattaacttatcatctccacaagttacaacacatagctgannnnnnnnaaatgaaaatgccaagtcattaacaccaccatcatgagcatca |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
27536605 |
tgtcaccttaattaacttatcatctccacaacttacgacacatagctgattttttggaaatgaaaatgccaagtcattaacaccaccatcatgagcatta |
27536506 |
T |
|
| Q |
245 |
atctgtaat |
253 |
Q |
| |
|
||||||||| |
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|
| T |
27536505 |
atctgtaat |
27536497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 13639733 - 13639825
Alignment:
| Q |
145 |
tgtcaccttaattaacttatcatctccacaagttacaacacatagctgannnnnnnnaaatgaaaatgccaagtcattaacaccaccatcatga |
238 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | ||| ||||||||| ||||| |||| |||||||||||||||||| ||||||| |
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| T |
13639733 |
tgtcaccttaattaacatatcatctccacaagattcaatgcatagctgatttttcggaaatg-aaattccaagtcattaacaccacaatcatga |
13639825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 405
Target Start/End: Original strand, 13631876 - 13631948
Alignment:
| Q |
333 |
atacctccaaatgctcctgtagtccattatggacatgataggtatataaatgaatcaaatgttttgcaaaagc |
405 |
Q |
| |
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||||||||||||||| |||| || ||| ||| ||||||| ||| |||||||||||||| ||||||||||| |
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| T |
13631876 |
atacctccaaatgctgatgtacacctttagggaattgataggaatacaaatgaatcaaatgctttgcaaaagc |
13631948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 253
Target Start/End: Complemental strand, 49957875 - 49957767
Alignment:
| Q |
145 |
tgtcaccttaattaacttatcatctccacaagttacaacacatagctgannnnnnnnaaatgaaaatgccaagtcattaacaccaccatcatgagcatca |
244 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||| || || || | | |||||||||| |||||| |||||||| ||||||||||| |
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|
| T |
49957875 |
tgtcaccttaattaacttgtcatccccacaagttacaatgcaaagttgtttgttcggataagaaaatgccaggtcattgacaccaccgacatgagcatca |
49957776 |
T |
|
| Q |
245 |
atctgtaat |
253 |
Q |
| |
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||||||||| |
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|
| T |
49957775 |
atctgtaat |
49957767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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