View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8470_low_5 (Length: 244)
Name: NF8470_low_5
Description: NF8470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8470_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 27743212 - 27742989
Alignment:
| Q |
11 |
gtaacatttattcaaatgttacaaattcnnnnnnnn-gttactatttagatttagtaaaaaatttcaactgttacttgtagtgtcttccgattcgttcag |
109 |
Q |
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| T |
27743212 |
gtaacatttattcaaatgttacaaattcaagaaaaaagttactatttagatttagtaaaaaatttcaactgttacttgtagtgtcttccgattcgttcag |
27743113 |
T |
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| Q |
110 |
tattaataagattagaattggacctggaactagaaggatgttaccatcttaagaccaatgtcatggagagtgtcttcaataggttttctccaaatcgatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27743112 |
tattaataagattagaattggacctggaactagaaggatgttaccatcttaagaccaatgtcatggagagtgtcttcaataggttttctccaaatcgatc |
27743013 |
T |
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| Q |
210 |
tcagtaattatccaacctgatgtc |
233 |
Q |
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|||||||||||||||||| ||||| |
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| T |
27743012 |
tcagtaattatccaacctaatgtc |
27742989 |
T |
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