View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8470_low_6 (Length: 231)

Name: NF8470_low_6
Description: NF8470
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8470_low_6
NF8470_low_6
[»] chr5 (19 HSPs)
chr5 (10-209)||(30750749-30750948)
chr5 (10-209)||(30061475-30061674)
chr5 (10-212)||(30337326-30337528)
chr5 (10-212)||(30676089-30676291)
chr5 (10-209)||(30712232-30712431)
chr5 (10-209)||(30484504-30484703)
chr5 (10-212)||(29854414-29854616)
chr5 (10-212)||(29873277-29873479)
chr5 (13-212)||(30436919-30437118)
chr5 (10-197)||(30207625-30207812)
chr5 (10-212)||(30401177-30401382)
chr5 (10-106)||(30476478-30476574)
chr5 (10-212)||(30241179-30241384)
chr5 (10-99)||(17417507-17417596)
chr5 (10-101)||(30520537-30520628)
chr5 (10-101)||(30560877-30560968)
chr5 (44-106)||(17984021-17984083)
chr5 (147-203)||(30520435-30520491)
chr5 (147-203)||(30560775-30560831)
[»] chr4 (2 HSPs)
chr4 (10-212)||(20295383-20295585)
chr4 (10-103)||(52353062-52353155)
[»] chr7 (1 HSPs)
chr7 (10-212)||(26708435-26708637)
[»] chr3 (1 HSPs)
chr3 (13-206)||(25292754-25292947)
[»] chr1 (2 HSPs)
chr1 (10-106)||(7100524-7100620)
chr1 (10-94)||(7580638-7580722)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 30750749 - 30750948
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750749 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 30750848  T
Q  110 ctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttacc 209  Q
    || ||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750849 ctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttacc 30750948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 30061475 - 30061674
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30061475 gtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 30061574  T
Q  110 ctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttacc 209  Q
    || |||||||||||||||| |||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30061575 ctgggatttccctaagagtgccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgttacc 30061674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 30337528 - 30337326
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337528 gtgagaagaaactcaacaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 30337429  T
Q  110 ctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttacc 209  Q
    || ||||||||||||||||||||||  ||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||    
T  30337428 ctgggatttccctaagagttccacccatctgtagagaaaacttgttcttacgttcagcaatattatctaacctccttgtaatctctttcaacctgttacc 30337329  T
Q  210 gat 212  Q
    |||    
T  30337328 gat 30337326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 30676291 - 30676089
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    ||||||||||||||  |||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  30676291 gtgagaagaaactcgacaatcttttcttgatcaacttctcgtccaaacacttttgattcagcaataattgagccggtttggcgcccttcagctacttgat 30676192  T
Q  110 ctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttacc 209  Q
    || ||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30676191 ctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttgcc 30676092  T
Q  210 gat 212  Q
    |||    
T  30676091 gat 30676089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 30712431 - 30712232
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    ||||||||||||||  |||||||||||||||||   |||| ||| | | |||||| ||||  |    |||||| ||||||||||||||||||||||||||    
T  30712431 gtgagaagaaactcgacaatcttttctttatcattgtctcttcccagcgcttttgattcaagaggggtggagctggtttggcgcccttcagctacttgat 30712332  T
Q  110 ctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttacc 209  Q
    || ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30712331 ctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttgaacctgttacc 30712232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 30484504 - 30484703
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    ||||||||||||||  ||||||||||||||||| | |||| ||| ||  |||||| ||||  |    |||||| ||||||||||||||||||||||||||    
T  30484504 gtgagaagaaactcgacaatcttttctttatcatcgtctcttcctaatgcttttgattcaagaggggtggagctggtttggcgcccttcagctacttgat 30484603  T
Q  110 ctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttacc 209  Q
    || ||||| ||||||||||| |||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30484604 ctgggattaccctaagagtttcacccgtctgtagagaaaacttgttctttctttcagcaatatcatctaacctccttgtaatctctttcaacctgttacc 30484703  T

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Target: chr5; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 29854414 - 29854616
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| ||    
T  29854414 gtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaacacttttggttcagcaataatggagctggtttgacgccattcagctacttcat 29854513  T
Q  110 ctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttacc 209  Q
     |  | ||||| ||| | |   |||   |  |||| |||||||||||||||| |||||||||||||| ||  |||||||||||||||| |||||||| ||    
T  29854514 ttgagctttccttaacaatagtaccctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatttccttgtaatctctttcaacctgttgcc 29854613  T
Q  210 gat 212  Q
    |||    
T  29854614 gat 29854616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 29873277 - 29873479
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||| |||||| |||| ||||||||||| ||    
T  29873277 gtgagaagaaactcaacaatcttttctttatcatcttctcgtccaaatacttttggttcaacaataatggagctggtttgacgccattcagctacttcat 29873376  T
Q  110 ctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttacc 209  Q
     |  | ||||| ||| | |   |||   |  |||| |||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| ||    
T  29873377 ttgagctttccttaacaatagtaccctcccgtagaaaaaacttgttcttactatcagcaatatcatccaatctccttgtaatctctttcaacctgttgcc 29873476  T
Q  210 gat 212  Q
    |||    
T  29873477 gat 29873479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 212
Target Start/End: Original strand, 30436919 - 30437118
Alignment:
Q  13 agaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctc 112  Q
    ||||||||||   ||||||||||||||||| | |||| ||| |||||||||| ||||  |    |||||| ||||||||||||||||||  ||||||||     
T  30436919 agaagaaactggacaatcttttctttatcatcgtctcttcctaacacttttgtttcaagaggggtggagctggtttggcgcccttcagcagcttgatctg 30437018  T
Q  113 ggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttaccgat 212  Q
    || |||||||||||||| |||| || |  ||||||||||||||||||| ||||||||||  ||| ||||||| |||||||||||| ||||||||||||||    
T  30437019 ggctttccctaagagttacacccgtatggagagaaaacttgttcttacgttcagcaatacgatccaacctccctgtaatctctttcaacctgttaccgat 30437118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 30207625 - 30207812
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    ||||||||||||||   |||||| ||||||||| ||||||| ||||| |||||||||||||||||||| ||||  ||||| |||| ||| ||||||| |     
T  30207625 gtgagaagaaactcgataatcttctctttatcatcttctcgcccaaatacttttggttcagcaataatagagctagtttgacgccattctgctacttcaa 30207724  T
Q  110 ctcggatttccctaagagttccacctgtcta-tagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttt 197  Q
     |    ||||||||| |||||||  | |||  || |  ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30207725 ttgatctttccctaaaagttccat-tctctcctaaatgaaacttgtttttactttcagcaatatcatctaacctccttgtaatctcttt 30207812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 30401177 - 30401382
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    |||||||||||||||  |||||||||||||||| ||| |||||||||||||| ||||| |||||||||||||  | |||| |||| |||| |||||| ||    
T  30401177 gtgagaagaaactcaaaaatcttttctttatcatcttttcgtccaaacacttctggtttagcaataatggagttgatttgacgccattcatctacttcat 30401276  T
Q  110 ctcggatttccctaagagttccac--ctgtcta-tagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 206  Q
    ||  | ||||||||| |  | ||   |  |||  ||||  ||| ||||||||| | |||||||||||||| || || |||||||||||||| ||||||||    
T  30401277 ctgagctttccctaacatatacagtaccatctcgtagaagaaatttgttcttaatatcagcaatatcatccaatcttcttgtaatctctttcaacctgtt 30401376  T
Q  207 accgat 212  Q
     |||||    
T  30401377 gccgat 30401382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 30476478 - 30476574
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctactt 106  Q
    ||||||||||||||  ||||| | ||| ||||| || |||||||||||||||| |||||||||||||||||||  |||||||||| |||||| ||||    
T  30476478 gtgagaagaaactcgacaatcctctctctatcatctactcgtccaaacactttgggttcagcaataatggagcttgtttggcgccattcagcaactt 30476574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 30241384 - 30241179
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    |||||||||||||    |||||| | ||||||  ||||||||||||||||||||||||||| |||||| | || |||||| |||| ||||||||| | ||    
T  30241384 gtgagaagaaactggataatcttctttttatcgtcttctcgtccaaacacttttggttcagtaataatagcgctggtttgacgccattcagctacgtcat 30241285  T
Q  110 ctcggatttccctaagagttcc---acctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 206  Q
     | || |||||| || ||||||   ||||  ||  ||| ||||||| ||| | || |||||||||||||| |||||||   |||||||||  ||||||||    
T  30241284 ttgggctttcccgaacagttccagtaccttcctgcagaaaaaacttcttcctcctatcagcaatatcatccaacctcccgttaatctcttccaacctgtt 30241185  T
Q  207 accgat 212  Q
    ||||||    
T  30241184 accgat 30241179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 17417596 - 17417507
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttca 99  Q
    ||||| ||||||||| ||||||| | | ||||| |||| ||||||||||| |||||||||||||||| ||||| ||||||||||| ||||    
T  17417596 gtgagcagaaactcaacaatcttctttgtatcatcttcccgtccaaacacctttggttcagcaataaaggagctggtttggcgccattca 17417507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 30520628 - 30520537
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagc 101  Q
    ||||||||||||||  ||||||| ||||||||| ||||||| ||| | |||||||||||||||||||| ||||  ||||| |||| ||||||    
T  30520628 gtgagaagaaactcgacaatcttctctttatcatcttctcgaccatatacttttggttcagcaataatagagctagtttgacgccattcagc 30520537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 30560968 - 30560877
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagc 101  Q
    ||||||||||||||  ||||||| ||||||||| ||||||| ||| | |||||||||||||||||||| ||||  ||||| |||| ||||||    
T  30560968 gtgagaagaaactcgacaatcttctctttatcatcttctcgaccatatacttttggttcagcaataatagagctagtttgacgccattcagc 30560877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 17984021 - 17984083
Alignment:
Q  44 cttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctactt 106  Q
    ||||||||||||||||||||| ||||||||||| || || ||||||||||| |||||| ||||    
T  17984021 cttctcgtccaaacacttttgattcagcaataacggggctggtttggcgccattcagccactt 17984083  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 30520491 - 30520435
Alignment:
Q  147 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacct 203  Q
    ||||||||| |||||||||||||||||||| || ||  ||||||| ||||| |||||    
T  30520491 aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacct 30520435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 30560831 - 30560775
Alignment:
Q  147 aaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacct 203  Q
    ||||||||| |||||||||||||||||||| || ||  ||||||| ||||| |||||    
T  30560831 aaacttgtttttactttcagcaatatcatcgaatctgtttgtaatttctttaaacct 30560775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 20295585 - 20295383
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    ||||||||||||||  ||||||||| ||||||| | |||| ||| ||  |||||| ||||  |    |||||| ||||||||||||||||||||||||||    
T  20295585 gtgagaagaaactcgacaatcttttttttatcatcgtctcttcccaatgcttttgattcaagaggggtggagctggtttggcgcccttcagctacttgat 20295486  T
Q  110 ctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttacc 209  Q
    || ||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  20295485 ctgggatttccctaagagttccacccatctgtagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctctttaaacctgctacc 20295386  T
Q  210 gat 212  Q
    |||    
T  20295385 gat 20295383  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 103
Target Start/End: Original strand, 52353062 - 52353155
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagcta 103  Q
    |||||||||||||| |||||||| ||||||||  |||  |||||||| | ||| ||||||| || |||||||| ||||||||||| ||||||||    
T  52353062 gtgagaagaaactcggcaatcttctctttatcttctttccgtccaaagattttcggttcagtaaaaatggagctggtttggcgccattcagcta 52353155  T

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Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 10 - 212
Target Start/End: Original strand, 26708435 - 26708637
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgat 109  Q
    ||||||||||||||  ||||||||||||||||| | |||| ||| ||| |||||| ||||  |    |||||| ||||||||||||||||||||||||||    
T  26708435 gtgagaagaaactcgacaatcttttctttatcatcgtctcttcccaacgcttttgtttcaagaggggtggagctggtttggcgcccttcagctacttgat 26708534  T
Q  110 ctcggatttccctaagagttccacctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgttacc 209  Q
     | || ||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||  ||| ||||||| |||||||||||| |||||||||||    
T  26708535 atgggctttccctaagagttccacccgtctgtagagaaaacttgttcttacgttcagcaatacgatccaacctccctgtaatctctttcaacctgttacc 26708634  T
Q  210 gat 212  Q
    |||    
T  26708635 gat 26708637  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 206
Target Start/End: Complemental strand, 25292947 - 25292754
Alignment:
Q  13 agaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctacttgatctc 112  Q
    |||||||||||  || |||| ||||||||| ||||||||||||| ||||||||||| |||||||| || |  |||||||||  ||||||||||| |  |     
T  25292947 agaagaaactcgacagtcttctctttatcatcttctcgtccaaatacttttggttcggcaataatagaactagtttggcgctattcagctacttcagttg 25292848  T
Q  113 ggatttccctaagagttcca-cctgtctatagagaaaacttgttcttactttcagcaatatcatctaacctccttgtaatctcttttaacctgtt 206  Q
     | ||||||||| ||||||| |||||| | |||  ||||||||||||| || ||||||||||||| || ||||||||||||||||| ||| ||||    
T  25292847 agctttccctaacagttccaccctgtcga-agaagaaacttgttcttagttgcagcaatatcatccaatctccttgtaatctctttcaacttgtt 25292754  T

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Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 7100524 - 7100620
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcccttcagctactt 106  Q
    ||||||||||||||| ||||||| ||||||||| |||||||||||||||  |||||||||||||||| ||||| ||||||||||| |||||| ||||    
T  7100524 gtgagaagaaactcaacaatcttctctttatcatcttctcgtccaaacatctttggttcagcaataaaggagctggtttggcgccattcagccactt 7100620  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 7580722 - 7580638
Alignment:
Q  10 gtgagaagaaactcagcaatcttttctttatcaacttctcgtccaaacacttttggttcagcaataatggagccggtttggcgcc 94  Q
    ||||||||||||||| ||||| | ||||||||| |||||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  7580722 gtgagaagaaactcaacaatcctctctttatcatcttctcgtccaaacacctttggttcggcaataatggagctggtttggcgcc 7580638  T

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