View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8471_high_2 (Length: 755)

Name: NF8471_high_2
Description: NF8471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8471_high_2
NF8471_high_2
[»] chr1 (1 HSPs)
chr1 (38-741)||(17399826-17400525)


Alignment Details
Target: chr1 (Bit Score: 626; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 626; E-Value: 0
Query Start/End: Original strand, 38 - 741
Target Start/End: Complemental strand, 17400525 - 17399826
Alignment:
Q  38 caaacaatatcaaagatatttaattaaccgattatacagcaaaaattgactagtttttccagcactacactacagtatcataccttgtcggatccccaaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17400525 caaacaatatcaaagatatttaattaaccgattatacagcaaaaattgactagtttttccagcactacactacagtatcataccttgtcggatccccaaa 17400426  T
Q  138 ccaacaatccagacccgaatatcagccttgtttctgcctccactgttgttgacacttgacaattcaaacctctctttcttccttcattactctttatcgt 237  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  17400425 ccaacaatccagacccgaatatcatccttgtttctgcctccactgttgttgaca-------attcaaacctctctttcttccttcattactctttatcgt 17400333  T
Q  238 gtttactacgtttgattcctatacctaccaaataaaccctctctttactcttcaactcaattctcaccctcccaaatcactatccacaccctcttcttcc 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17400332 gtttactacgtttgattcctatacctaccaaataaaccctctctttactcttcaactcaattctcaccctcccaaatcactatccacaccctcttcttcc 17400233  T
Q  338 acaccccatttttcatacaataaaccacttgggtctaactttttactctcaaaaccttgatttccacatctgatttgtgtaaagttttcatctttacttc 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17400232 acaccccatttttcatacaataaaccacttgggtctaactttttactctcaaaaccttgatttccacatctgatttgtgtaaagttttcatctttacttc 17400133  T
Q  438 aaactagaactgggttttggtccaaacaatctcaacatcaaggttatgatttaattttgatataaatttatactc---nnnnnnnatgctttgtgtttac 534  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||    
T  17400132 aaactagaactgggttttggtccaaacaatctcaacatcaaggttatgatttaattttgatataaatttatactcttttttttttatgctttgtgtttac 17400033  T
Q  535 tatggcttcttataagaaaccacgtcttagagatttggctttgcgtcgtttattatctgtggtgtttcttactttatgtggggttttgatattgatattt 634  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17400032 tatggcttcttataagaaaccacgtcttagagatttggctttgcgtcgtttattatctgtggtgtttcttactttatgtggggttttgatattgatattt 17399933  T
Q  635 ttacttggatcaaattcaagtacaactattgaaactaatgatttacaaagtgttgatgatggtgctggttatcgtcgggatttgaagtttacaaagatgc 734  Q
    ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  17399932 ttacttggatcaaattcaagtacaactattgaaactaatgaatcacaaagtgttgatgatggtgctggttatcgtcgcgatttgaagtttacgaagatgc 17399833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University