View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8471_high_3 (Length: 685)
Name: NF8471_high_3
Description: NF8471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8471_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 574; Significance: 0; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 16 - 670
Target Start/End: Complemental strand, 4009968 - 4009304
Alignment:
| Q |
16 |
atactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4009968 |
atactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaggtcagctagagatgttatttagaactcttgattggtt |
4009869 |
T |
|
| Q |
116 |
tcgatctgatagtagaataattttaacaactagagataagcaagtacttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggac |
215 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4009868 |
tcgatccgatagtagaataattttaacaactagagataagcaagtacttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggat |
4009769 |
T |
|
| Q |
216 |
tctagtgaagcacttgagcttttcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgcca |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4009768 |
tctagtgaagcacttgagcttttcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaagtggtcgattatgcca |
4009669 |
T |
|
| Q |
316 |
aaggaattccattagttcttgaagttttggctcatctacttcgtggaaaagaca----------ggaaagtcagctggacaaacttgaaagactgccaaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| || |
|
|
| T |
4009668 |
aaggaattccattagttcttgaagttttggctcatctacttcgtggaaaagacaaggaagaatgggaaagtcagctggacaaacttaaaagactgccgaa |
4009569 |
T |
|
| Q |
406 |
taaaaaatttcaagatgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgagg |
505 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4009568 |
taaaaaaattcaagatgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaacgggttgagg |
4009469 |
T |
|
| Q |
506 |
ttgaaagtggattacatgaaacttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataacta |
605 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
4009468 |
ttgaaagtggattgcatgaaacttttattgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaagctcttataacaa |
4009369 |
T |
|
| Q |
606 |
tttctgaagataatgttatatctatgcatgacattctacaagaaatgggtcgggaggttgttcgt |
670 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4009368 |
tttctgaagataatgtaatatctatgcatgacattctacaagaaatgggtcgggaggttgttcgt |
4009304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 63 - 669
Target Start/End: Original strand, 3955693 - 3956303
Alignment:
| Q |
63 |
gatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtttcgatctgatagtagaataattttaacaactagagataagcaagtac |
162 |
Q |
| |
|
|||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| |
|
|
| T |
3955693 |
gatgttaaggaagaaaatcaactagagattttatttggaactcttgattggtttcgatctgatagtagaataattgtaacaattagagacaagcaagtac |
3955792 |
T |
|
| Q |
163 |
ttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggactctagtgaagcacttgagcttttcaatttgaatgcctttaaacaaag |
262 |
Q |
| |
|
||||| ||||||||||||| |||| ||||| | ||||||||| || | | ||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3955793 |
ttattactaatgaagttga------tgatatatatgaagttggggtactgaattatagcgaagcacttgagcttttcaatttgaatgcctttaatcaaag |
3955886 |
T |
|
| Q |
263 |
tcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaaggaattccattagttcttgaagttttggctcatctacttcgtgga |
362 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
3955887 |
tcatcttgaaatggagtactatgagctttcaaagaaggtgatcgattatgccaaaggaattccattagttcttaaagttttggctcatctgcttcgtgga |
3955986 |
T |
|
| Q |
363 |
aaagaca----------ggaaagtcagctggacaaacttgaaagactgccaaataaaaaatttcaagatgtaatgaggctcagttatgatgatcttgatc |
452 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3955987 |
aaagacaaggaagaatgggaaagtcagctggacaaacttaaaagactgccaaataaaaaatttcaagatgtaatgaggctcagttatgatgatcttgatc |
3956086 |
T |
|
| Q |
453 |
gtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaagtggattacatgaaacttttactgaaagattttgaaagtga |
552 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3956087 |
gtttagagcaaaagtattttttagatattgcatgtttcttcaacgggttgaggttgaaagtggattacatgaaacttttattgaaagattttgaaagtga |
3956186 |
T |
|
| Q |
553 |
taatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctgaagataatgttatatctatgcatgacattctacaagaaatg |
652 |
Q |
| |
|
||||||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3956187 |
taatgcagtggctgttggtttagaaaggttgaaagataaatctcttataacaatttctgaagataatgttatatccatgcatgacattctacaagaaatg |
3956286 |
T |
|
| Q |
653 |
ggtcgggaggttgttcg |
669 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
3956287 |
ggtcgggaggttgttcg |
3956303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 24 - 669
Target Start/End: Complemental strand, 3801550 - 3800897
Alignment:
| Q |
24 |
agaaggattggtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtttcgatctg |
123 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3801550 |
agaaggattggccgtatgaaggttcttattgatcttgatgatattaaggaagaaggtctgctagagatgttatttggaactcttgattggtttcaatctg |
3801451 |
T |
|
| Q |
124 |
atagtagaataattttaacaactagagataagcaagtacttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggactctagtga |
223 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||| |||||||||| | || |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
3801450 |
atagtagaataattgtaacaagtagagataagcaagtacttattcctaatgaagtgtatgacgatgatctatatgaggttggggtattggattctagtga |
3801351 |
T |
|
| Q |
224 |
agcacttgagcttttcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaaggaatt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||| |||||||||||| || |
|
|
| T |
3801350 |
agcacttgagcttttcaatttgaatgcctttaaacaaagtcatcctgaaatggagtactatgagctatcaaagagggtgatcgaatatgccaaaggagtt |
3801251 |
T |
|
| Q |
324 |
ccattagttcttgaagttttggctcatctacttcgtggaaaa----------gacaggaaagtcagctggacaaacttgaaagactgccaaataaaaaat |
413 |
Q |
| |
|
|||||||||||| |||||||||||||| | |||||||||||| | |||||||| ||| ||||||||| |||||||||||| | || || |
|
|
| T |
3801250 |
ccattagttcttaaagttttggctcatatgcttcgtggaaaatgtaaagaagtatgggaaagtctgctagacaaacttaaaagactgccaattcaagaag |
3801151 |
T |
|
| Q |
414 |
ttcaagatgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaagt |
513 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
3801150 |
ttcatgatgtaatgagactcagttatgatgatcttgatcatttagagaaaaagtattttttagatattgcatgtttcttcaatgggttgaatttgaaagt |
3801051 |
T |
|
| Q |
514 |
ggattacatgaaacttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctgaa |
613 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3801050 |
ggattacatgaaaattttactgaaagattgtgaaagtgataattcagtggctgttgggttagaaaggttaaaagataaagctcttataactatttct--c |
3800953 |
T |
|
| Q |
614 |
gataatgttatatctatgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3800952 |
gataatgttatatctatgcatgacattctatgagaaatgggtcgggaggttgttcg |
3800897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 23 - 669
Target Start/End: Complemental strand, 4025191 - 4024541
Alignment:
| Q |
23 |
gagaaggattggtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtttcgatct |
122 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
4025191 |
gagaaggattggccgtatgaaggtccttattgttcttgatgacgttaaggaagaaggtcagatagagatgttatttggaacacttgattggcttctatct |
4025092 |
T |
|
| Q |
123 |
gatagtagaataattttaacaactagagataagcaagtacttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggactctagtg |
222 |
Q |
| |
|
|||||||| |||||| | ||||||||||| | ||||||||||||| |||||||||||| ||| ||||| |||||||||||||||| ||||||| |
|
|
| T |
4025091 |
gatagtaggataattgtcacaactagagacatgcaagtacttatttgtaatgaagttgatcatg------tatatgaggttggggtattggattctagtg |
4024998 |
T |
|
| Q |
223 |
aagcacttgagcttttcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaaggaat |
322 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||| |||||||||||| || ||||| ||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4024997 |
aagcacttgagcttttcaacttgaatgcatttaaacaacgtcatcttgaaacggtgtactttgagctatcaaagaaggtgatcgattatgccaaaggaat |
4024898 |
T |
|
| Q |
323 |
tccattagttcttgaagttttggctcatctacttcgtggaaaagaca----------ggaaagtcagctggacaaacttgaaagactgccaaataaaaaa |
412 |
Q |
| |
|
||||||||||||| |||||||||||||| | |||||||||||| | | |||||||||||| ||||||||| ||||||||||| | ||||| |
|
|
| T |
4024897 |
tccattagttcttaaagttttggctcatatgcttcgtggaaaaaataaagaagtatgggaaagtcagctagacaaacttaaaagactgccagttcaaaaa |
4024798 |
T |
|
| Q |
413 |
tttcaagatgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaag |
512 |
Q |
| |
|
|||| ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
4024797 |
gttcatgatgtaatgagactaagttatgatgatcttgatcgtttagagaaaaagtattttttagatattgcatgtttcttcaacgggttgaatttgaaag |
4024698 |
T |
|
| Q |
513 |
tggattacatgaaacttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctga |
612 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |||||| |||||||| |||| ||||||||||| | ||||||| ||||||||||||||||||| |
|
|
| T |
4024697 |
tggattacatgaaacttttattgaaagattgtgaaagcgataattcagtggctgttggtttagaaaggttgagagataaagctcttataactatttctga |
4024598 |
T |
|
| Q |
613 |
agataatgttatatctatgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4024597 |
agataatattatatctatgcatgacattctacaagaaatgggtcgggaggttgttcg |
4024541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 39 - 669
Target Start/End: Original strand, 3919919 - 3920559
Alignment:
| Q |
39 |
atgaaggttcttattgttcttgatgatgttaaggaagaaag-tcagctagagatgttatttggaactcttgattggtttcgatctgatagtagaataatt |
137 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| || || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3919919 |
atgaaggttcttatcgttcttgatgatgtcaagga-gacagatcagctcgagatgttatttggaactcttgattggtttcaatctgatagtagaataatt |
3920017 |
T |
|
| Q |
138 |
ttaacaactagagataagcaagtacttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggactctagtgaagcacttgagcttt |
237 |
Q |
| |
|
||||| | ||||||||||||||||| | ||||||||||||| |||||| ||||||| ||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
3920018 |
ctaacatccagagataagcaagtactaaggactaatgaagttgatcatgatggtctatatgaggttagggtattggattctagtgaagcacttgagcttt |
3920117 |
T |
|
| Q |
238 |
tcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaaggaattccattagttcttga |
337 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||| |||||||||||| |||||||||||||| | |
|
|
| T |
3920118 |
tcaatttgaatgcctttaaacaaagtcatcctgaaatggagtactatgagctatcaaagagggtgatcgaatatgccaaaggagttccattagttcttaa |
3920217 |
T |
|
| Q |
338 |
agttttggctcatctacttcgtggaaaagaca----------ggaaagtcagctggacaaacttgaaagactgccaaataaaaaatttcaagatgtaatg |
427 |
Q |
| |
|
||||||||||||| | |||||||||||| ||| |||||||||||| ||||||||| ||||||||||| | ||||| |||| |||||| || |
|
|
| T |
3920218 |
agttttggctcatatgcttcgtggaaaaaacaaagaagtatgggaaagtcagctagacaaacttaaaagactgccagttcaaaaagttcatgatgtagtg |
3920317 |
T |
|
| Q |
428 |
aggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaagtggattacatgaaac |
527 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
3920318 |
aaactcagttatgatgatcttgatcgtttagagaaaaagtattttttagatattgcatgtttcttcaatgggttgaatttgaaagtggattacatgaaac |
3920417 |
T |
|
| Q |
528 |
ttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctgaagataatgttatatc |
627 |
Q |
| |
|
|||| ||||||||| ||| ||||||||| |||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3920418 |
atttattgaaagattgtgatagtgataattacgtggctggtgggttagaaagcttgaaagataaagctcttataactatttctgaagataatgttatatc |
3920517 |
T |
|
| Q |
628 |
tatgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3920518 |
tatgcatgacattctacaagaaatgggtcgggaggtagttcg |
3920559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 30 - 669
Target Start/End: Complemental strand, 3986953 - 3986304
Alignment:
| Q |
30 |
attggtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtttcgatctgatagta |
129 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| | ||||||||| ||||||| ||| ||||||| |
|
|
| T |
3986953 |
attggacgcatgaaggttcttatcattcttgatgatgttaaggacgaagatcagctagagatgttattcgaaactcttgactggtttcaatcagatagta |
3986854 |
T |
|
| Q |
130 |
gaataattttaacaactagagataagcaagtacttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggactctagtgaagcact |
229 |
Q |
| |
|
|||||||| ||||| | |||||||||||||||||| ||| |||||||||||| |||||||||| |||| |||||||||||||||| |||||||| ||||| |
|
|
| T |
3986853 |
gaataattctaacagccagagataagcaagtactttttgataatgaagttgacgatgatgatcgatatgaggttggggtattggattctagtgatgcact |
3986754 |
T |
|
| Q |
230 |
tgagcttttcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaaggaattccatta |
329 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||| ||||||| ||||||||||||||| ||||||| |
|
|
| T |
3986753 |
tgcacttttcaatttgaatgcctttaaacaaagtcatcttgaaactgagtttgatgaaatatcaaagagggtggtcaattatgccaaaggaaatccatta |
3986654 |
T |
|
| Q |
330 |
gttcttgaagttttggctcatctacttcgtggaaaagaca----------ggaaagtcagctggacaaacttgaaagactgccaaataaaaaatttcaag |
419 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||| ||| |||||||||||| ||||||||| ||||||||||| ||||||| |||| | |
|
|
| T |
3986653 |
gttcttaaagttttggctcatatgcttcgtggaaaaaacaaagaagtatgggaaagtcagctagacaaacttaaaagactgccagttaaaaaagttcatg |
3986554 |
T |
|
| Q |
420 |
atgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaagtggatta |
519 |
Q |
| |
|
||||| ||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
3986553 |
atgtagtgaaactcagttacgatgatcttgatcgtttagagaaaaagtattttttagatattgcatgtttcttcaatgggttgagtttgaaagtggatta |
3986454 |
T |
|
| Q |
520 |
catgaaacttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctgaagataat |
619 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||||||| |||||||| ||||| |||||||||| ||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
3986453 |
catgaaacttttattgaaagattgtgaaggtgataattcagtggctgttgggatagaaaggttgaaagataaagctctcataactatttctgaagataat |
3986354 |
T |
|
| Q |
620 |
gttatatctatgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3986353 |
gttatatctatgcatgacattcttcaagaaatgggtcgggaggttgttcg |
3986304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 39 - 669
Target Start/End: Complemental strand, 3817545 - 3816905
Alignment:
| Q |
39 |
atgaaggttcttattgttcttgatgatgttaaggaagaaag-tcagctagagatgttatttggaactcttgattggtttcgatctgatagtagaataatt |
137 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| || || |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3817545 |
atgaaggttcttatcgttcttgatgatgtcaagga-gacagatcagctcgagatgttatttggaactcttgattggtttcaatctgatagtagaataatt |
3817447 |
T |
|
| Q |
138 |
ttaacaactagagataagcaagtacttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggactctagtgaagcacttgagcttt |
237 |
Q |
| |
|
||||| | ||||||||||||||||| | |||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
3817446 |
ctaacatccagagataagcaagtactaaggaataatgaagttgaagatgatgatatatatgaggttggggtattggattctagtgaagcacttgtgcttt |
3817347 |
T |
|
| Q |
238 |
tcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaaggaattccattagttcttga |
337 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||| ||||||||| | |
|
|
| T |
3817346 |
tcaattcgaatgcctttaaacaaagtcatcttgaaatggagtactatgagctatcaaagagtgtggtcaattatgccaaagggattccgttagttcttaa |
3817247 |
T |
|
| Q |
338 |
agttttggctcatctacttcgtggaaaagaca----------ggaaagtcagctggacaaacttgaaagactgccaaataaaaaatttcaagatgtaatg |
427 |
Q |
| |
|
||||| |||||| | |||||||||||| | | |||||||||||| ||||||||| |||||||||| | ||||| || | |||| |||| |
|
|
| T |
3817246 |
ggttttagctcatatgcttcgtggaaaaaagaaagaagtatgggaaagtcagctagacaaacttagaagactgccagttcaaaaagtttatgatgcaatg |
3817147 |
T |
|
| Q |
428 |
aggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaagtggattacatgaaac |
527 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
3817146 |
agactcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaatgggttggatttgaaagtggattacatgaaac |
3817047 |
T |
|
| Q |
528 |
ttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctgaagataatgttatatc |
627 |
Q |
| |
|
|||| ||||||||| ||| ||||||||| |||||| ||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
3817046 |
atttattgaaagattgtgatagtgataattacgtggctggtgggttagaaacgttgaaagataaagctcttataactatttctgaagataatgttatatc |
3816947 |
T |
|
| Q |
628 |
tatgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
3816946 |
tatgcatgacattcttcaagaaatgggttgggagattgttcg |
3816905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 39 - 669
Target Start/End: Original strand, 3933143 - 3933783
Alignment:
| Q |
39 |
atgaaggttcttattgttcttgatgatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtttcgatctgatagtagaataattt |
138 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||| | || ||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
3933143 |
atgaaagttcttattgttcttgatgatgtcaatgaaacagatctgctagagatgttatttggatctcttgattggtttcgattagatagtagaataattg |
3933242 |
T |
|
| Q |
139 |
taacaactagagataagcaagtacttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggactctagtgaagcacttgagctttt |
238 |
Q |
| |
|
|||| | |||| |||||||||| ||| || | ||||||||||| |||||||||||| | ||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
3933243 |
taaccagtagaaataagcaagtgcttgttaccaatgaagttgataatgatgatctatgtgaggttagggtattggattctagtgaagcacttgagctttt |
3933342 |
T |
|
| Q |
239 |
caatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaaggaattccattagttcttgaa |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| |||| |||||||||||| |||||||||||||| || |
|
|
| T |
3933343 |
caatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgagctatcagagagggtgatcgaatatgccaaaggagttccattagttcttaaa |
3933442 |
T |
|
| Q |
339 |
gttttggctcatctacttcgtggaaaa----------gacaggaaagtcagctggacaaacttgaaagactgccaaataaaaaatttcaagatgtaatga |
428 |
Q |
| |
|
|||||||||||| | |||||||||||| | ||||||| |||| ||||||||| |||||||||||| | |||| |||| |||||||||| |
|
|
| T |
3933443 |
gttttggctcatatgcttcgtggaaaatgtaaagaagtatgggaaagtaagctagacaaacttaaaagactgccaattccaaaagttcatgatgtaatga |
3933542 |
T |
|
| Q |
429 |
ggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaagtggattacatgaaact |
528 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| || ||||||||||||||| |
|
|
| T |
3933543 |
ggcttagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaatgggttggatttggaattggattacatgaaaca |
3933642 |
T |
|
| Q |
529 |
tttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctgaagataatgttatatct |
628 |
Q |
| |
|
|||| ||||||||| ||| ||||||||| |||||| ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3933643 |
tttattgaaagattgtgatagtgataattacgtggctggtgggttagaaacgttgaaagataaagctcttataactatttctgaagataatgttatatct |
3933742 |
T |
|
| Q |
629 |
atgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
3933743 |
atgcatgacattcttcaagaaatgggttgggaggttgttcg |
3933783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 29 - 669
Target Start/End: Complemental strand, 4002258 - 4001615
Alignment:
| Q |
29 |
gattggtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtttcgatctgatagt |
128 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4002258 |
gattggccgtatgaaggttcttattgttcttgatgatgttaaggaagaaggtcaaatagagatgttatttggaactcttgattggtttcgatccgatagt |
4002159 |
T |
|
| Q |
129 |
agaataattttaacaactagagataagcaagtacttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggactctagtgaagcac |
228 |
Q |
| |
|
|| |||||| |||| |||||||| ||||||||||||||| ||||||||||||| |||| ||||| | |||||||| ||| | ||||||| |||| |
|
|
| T |
4002158 |
aggataattgtaacgactagagacaagcaagtacttattactaatgaagttga-----ttgatatatatgaagttggggtgttgaaacctagtgaggcac |
4002064 |
T |
|
| Q |
229 |
ttgagcttttcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaaggaattccatt |
328 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | ||||| |||||||||||||| |
|
|
| T |
4002063 |
ttgagctttttcatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgagctatcaaagagggtggttgcgtatgcaaaaggaattccatt |
4001964 |
T |
|
| Q |
329 |
agttcttgaagttttggctcatctacttcgtggaaaag----------acaggaaagtcagctggacaaacttgaaagactgccaaataaaaaatttcaa |
418 |
Q |
| |
|
|| | || |||||||||||||| ||||||||||||||| | |||||||||||| || |||||| ||| ||| |||| ||||||| || | |
|
|
| T |
4001963 |
aggtgttaaagttttggctcatttacttcgtggaaaagttaaggaagtatgggaaagtcagcttgataaacttaaaaaacttccaagtaaaaaagtttat |
4001864 |
T |
|
| Q |
419 |
gatgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaagtggatt |
518 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
4001863 |
gatgtaatgagactcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaacgggttgaatttgaaagtggatt |
4001764 |
T |
|
| Q |
519 |
acatgaaacttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctgaagataa |
618 |
Q |
| |
|
||||||||| | || | |||| ||||||||| ||| |||||| | |||| ||||||||||| ||||||||| |||||||||||||||| || |||| |
|
|
| T |
4001763 |
acatgaaacatctatt--aagagactgaaagtgacaattcagtggttgttggtttagaaaggttgaaagataaagctcttataactatttcgaaatataa |
4001666 |
T |
|
| Q |
619 |
tgttatatctatgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4001665 |
tgttgtatctatgcatgacattttacaagaaatgggtcgggaggttgttcg |
4001615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 28 - 669
Target Start/End: Complemental strand, 3809976 - 3809322
Alignment:
| Q |
28 |
ggattggtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtttcgatctgatag |
127 |
Q |
| |
|
||||||| || |||||||||||||| ||||||||||| || |||| | |||||| || | |||||||||| | ||||||||||| || |||||| |
|
|
| T |
3809976 |
ggattggccgcatgaaggttcttatcgttcttgatgacgtcaagggtacagatcagctggaaaaattatttggaagttgtgattggtttcaatatgatag |
3809877 |
T |
|
| Q |
128 |
tagaataattttaacaactagagataagcaagtacttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggactctagtgaagca |
227 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||| | | ||||||||||||||| ||| ||||| | |
|
|
| T |
3809876 |
tagaataattttaacagccagagataagcaagtacttattgctaatgaagttgataaagatgatctgtttgaggttggggtattgggtcctactgaagaa |
3809777 |
T |
|
| Q |
228 |
cttgagcttttcaatttgaatgcctttaaacaaagtcatcttgaaatgga---gtactatgatctatcaaagaaggtggtcgattatgccaaaggaattc |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| | || || | |||| ||||||||| |||| ||| |||||||||||||||| |
|
|
| T |
3809776 |
cttgagcttttcaatttgaatgcctttaaacaaagtgatcttgaagttgatcagttttgtgatgtatcaaagagggtgaccgaatatgccaaaggaattc |
3809677 |
T |
|
| Q |
325 |
cattagttcttgaagttttggctcatctacttcgtggaaaagaca----------ggaaagtcagctggacaaacttgaaagactgccaaataaaaaatt |
414 |
Q |
| |
|
||||||||||| ||||||||||| || | |||||||||||| | | |||||||||||| ||||||||| |||||||||| | || || | |
|
|
| T |
3809676 |
cattagttcttaaagttttggctaatatgcttcgtggaaaaaataaagaagtatgggaaagtcagctagacaaacttagaagactgccagttcaagaagt |
3809577 |
T |
|
| Q |
415 |
tcaagatgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaagtg |
514 |
Q |
| |
|
| | | |||||||| |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||| |||||||| |||| |||| |
|
|
| T |
3809576 |
tgataaagtaatgagactcagttatgatgatcttgatcctttagagaagaagtattttttagatattgcatgtttcttcaatgggttgagtttgagagtg |
3809477 |
T |
|
| Q |
515 |
gattacatgaaacttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctgaag |
614 |
Q |
| |
|
| |||||| | ||||||| ||||||||| | | ||||||||| |||||||| |||||||||||| || ||||| ||| |||||||||||||||||||| |
|
|
| T |
3809476 |
ggttacataacacttttattgaaagattctaacagtgataattcagtggctgctgggttagaaagcttgaaagacaaagctcttataactatttctgaat |
3809377 |
T |
|
| Q |
615 |
ataatgttatatctatgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3809376 |
ataatgttatatctatgcatgacattctacaagaaatgggtcgggaggtagttcg |
3809322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 24 - 365
Target Start/End: Complemental strand, 4218607 - 4218266
Alignment:
| Q |
24 |
agaaggattggtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtttcgatctg |
123 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
4218607 |
agaaggattgaccgtatgaaggttcttattgttcttgatgatattaaggaagaaggtctgctagagatgttatttggaactcttgattggtttcgatccg |
4218508 |
T |
|
| Q |
124 |
atagtagaataattttaacaactagagataagcaagtacttattgctaatgaagttgaagatgatgatctatatcaggttggggtattggactctagtga |
223 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | |||||||||||| | ||||| || |
|
|
| T |
4218507 |
atagtagaatcattgtaacatctagagataagcaagtacttattgctaatgaagttgatgatgatgatgtatatgaagttggggtattgaattctagcga |
4218408 |
T |
|
| Q |
224 |
agcacttgagcttttcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaaggaatt |
323 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4218407 |
tgcacttgcgcttttcaatttgaatgcctttaaagaaagtcatcttgaaattaagtactacgatctatcaaagaaggtggtcgattatgccaaaggaatt |
4218308 |
T |
|
| Q |
324 |
ccattagttcttgaagttttggctcatctacttcgtggaaaa |
365 |
Q |
| |
|
|||||||||||| ||||||||| |||| | ||||||||||| |
|
|
| T |
4218307 |
ccattagttcttaaagttttgggtcatatgtttcgtggaaaa |
4218266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 422 - 669
Target Start/End: Complemental strand, 4218196 - 4217949
Alignment:
| Q |
422 |
gtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaagtggattaca |
521 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
4218196 |
gtaatgagactcagttatgatgatcttgatctcttagagcaaaagtattttttagatattgcatgtttcttcaatgggttgaatttgaaagtggattaca |
4218097 |
T |
|
| Q |
522 |
tgaaacttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctgaagataatgt |
621 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
4218096 |
tgaaacttttattgaaagattatgaaagtgataattcagtggccgttgggttagaaaggttgaaagataaagctcttattactatttctgaagataatgt |
4217997 |
T |
|
| Q |
622 |
tatatctatgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
||||||||||||||| ||| |||| | |||||||||||||||||||| |
|
|
| T |
4217996 |
aatatctatgcatgactttcaacaaaagatgggtcgggaggttgttcg |
4217949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 226 - 669
Target Start/End: Complemental strand, 4018479 - 4018026
Alignment:
| Q |
226 |
cacttgagcttttcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaaggaattcc |
325 |
Q |
| |
|
||||||||||||||||||||||||| || ||| | | |||||||| ||||||||||| ||| |||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
4018479 |
cacttgagcttttcaatttgaatgctttcaaagttaaggaacttgaaattgagtactatgagctaacaaagagggtggtcaattatgccaaaggcattcc |
4018380 |
T |
|
| Q |
326 |
attagttcttgaagttttggctcatctacttcgtggaaaagaca----------ggaaagtcagctggacaaacttgaaagactgccaaataaaaaattt |
415 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||| |||||||| | ||||||||| || ||||| ||| ||| | |||||| ||||||| || |
|
|
| T |
4018379 |
attagttcttaaagttttggctcatcttcttcgcggaaaagataagctagtatgggaaagtcaactagacaagcttaaaaaaatgccaagtaaaaaagtt |
4018280 |
T |
|
| Q |
416 |
caagatgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaagtgg |
515 |
Q |
| |
|
|||||||||| ||| | |||||||||||||| ||||| |||| ||||| ||||| |||| |||||||||| ||||| || | | |||||||||| |
|
|
| T |
4018279 |
caagatgtaacgagattgagttatgatgatctggatcgcaaagagaaaaagattttttcagatcttgcatgttttttcaatggatcaaatttgaaagtgg |
4018180 |
T |
|
| Q |
516 |
attacatgaaacttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctgaaga |
615 |
Q |
| |
|
| ||||| ||| |||| ||||||||| ||||||||||||| |||| || | ||||||||||||||| ||||||||| ||||||| || ||||| |||| |
|
|
| T |
4018179 |
actacataaaatttttgttgaaagattctgaaagtgataattcagtagccagtgggttagaaaggttgaaagataaaggtcttatatctttttctaaaga |
4018080 |
T |
|
| Q |
616 |
taatgttatatctatgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
4018079 |
taatgttatatccatgcatgacattatacaagaaatgggtagggaaattgttcg |
4018026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 226 - 669
Target Start/End: Original strand, 3963629 - 3964082
Alignment:
| Q |
226 |
cacttgagcttttcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaaggaattcc |
325 |
Q |
| |
|
||||||||||||||||||||||||| || ||| | | |||||||| |||||| |||| |||||||||| |||||| ||||||||||||| ||||| |
|
|
| T |
3963629 |
cacttgagcttttcaatttgaatgctttcaaaggtaaggaacttgaaattgagtacaatgagctatcaaagagggtggtgaattatgccaaaggcattcc |
3963728 |
T |
|
| Q |
326 |
attagttcttgaagttttggctcatctacttcgtggaaaagaca----------ggaaagtcagctggacaaacttgaaagactgccaaataaaaaattt |
415 |
Q |
| |
|
|||||||||| |||||||||| ||||| | || |||||||| | ||||||||| || ||||| ||| || | |||||| ||||||| || |
|
|
| T |
3963729 |
attagttcttaaagttttggcgcatcttgtccgcggaaaagataagctagtatgggaaagtcaactagacaagcttagaaaaatgccaagtaaaaaagtt |
3963828 |
T |
|
| Q |
416 |
caagatgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttgaaagtgg |
515 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||| |||||||||| ||||||||||||||||||||| ||||| |||| || |||||||||| |
|
|
| T |
3963829 |
caagatgtaatgagattgagttatgatgatctagatcgcgaagagcaaaagatttttttagatattgcatgttttttcaatgggtcgaatttgaaagtgg |
3963928 |
T |
|
| Q |
516 |
attacatgaaacttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttctgaaga |
615 |
Q |
| |
|
| ||| | ||||| || |||||||| ||||||||||||| |||| || | ||||||||||||||| ||||||||| |||| | || ||||| || | |
|
|
| T |
3963929 |
actacctaaaactattgtggaaagattctgaaagtgataattcagtagccagtgggttagaaaggttgaaagataaagatcttgtttctgtttctaaaca |
3964028 |
T |
|
| Q |
616 |
taatgttatatctatgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| |||||| ||||| ||||||| |
|
|
| T |
3964029 |
taatgttatatctatgcatggaattatacaagacatgggtagggagattgttcg |
3964082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 3954566 - 3954611
Alignment:
| Q |
23 |
gagaaggattggtcgtatgaaggttcttattgttcttgatgatgtt |
68 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3954566 |
gagaaggattggccgtatgaaggttcttattgttcttgatgatgtt |
3954611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 23 - 669
Target Start/End: Complemental strand, 13397915 - 13397256
Alignment:
| Q |
23 |
gagaaggattggtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtttcgatct |
122 |
Q |
| |
|
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13397915 |
gagaaggattggccatatgaaggttcttattgttcttgatgatgttacggaagaaggtcagctggagatgttatttggaactcttgattggtttcgatct |
13397816 |
T |
|
| Q |
123 |
gatagtagaataattttaacaactagagataagcaagtacttattgctaatgaa---gttgaagatgatgatctatatcaggttggggtattggactcta |
219 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||| ||||||| | ||||| ||||| |||||||||| |||| |
|
|
| T |
13397815 |
gatagtagaataattataacaaccagggataagcaagtacttattgctaatgaagttgttgatgatgatgctttatatgaggttagggtattggattcta |
13397716 |
T |
|
| Q |
220 |
gtgaagcacttgagcttttcaatttgaatgcctttaaacaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattatgccaaagg |
319 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
13397715 |
gtgaagcacttgcgcttttcaatttgaatgcctttaaacaaagtcatcttgaaaacgagttttatgatgtatcaaagagggtggtcgattatgccaaagg |
13397616 |
T |
|
| Q |
320 |
aattccattagttcttgaagttttggctcatctacttcgtggaaaagaca----------ggaaagtcagctggacaaacttgaaagactgccaaataaa |
409 |
Q |
| |
|
||| |||||||||||| |||||||||||||| | ||||||||||| | | |||||||||||| ||||||||| |||||||||||| | || |
|
|
| T |
13397615 |
aatcccattagttcttaaagttttggctcatatgcttcgtggaaagaataaagaactatgggaaagtcagctagacaaacttaaaagactgccaattcaa |
13397516 |
T |
|
| Q |
410 |
aaatttcaagatgtaatgaggctcagttatgatgatcttgatcgtttagagcaaaagtattttttagatattgcatgtttcttcaaagggttgaggttga |
509 |
Q |
| |
|
||| |||| ||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |||| |
|
|
| T |
13397515 |
aaagttcatgatgtaatgagactcagttttgatgatcttgatcgtttagagcagaagtattttttagatattgcatgtttcttcaacgggatgagtttga |
13397416 |
T |
|
| Q |
510 |
aagtggattacatgaaacttttactgaaagattttgaaagtgataatgcagtggctattgggttagaaaggttaaaagataaatctcttataactatttc |
609 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||||||||||||| | || |||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
13397415 |
aagtggagtacatgaaacttttattgaaagattatgaaagtgataattctgtagctattgggttagaaaggttgaaagataaagctcttataactatttc |
13397316 |
T |
|
| Q |
610 |
tgaagataatgttatatctatgcatgacattctacaagaaatgggtcgggaggttgttcg |
669 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
13397315 |
taaagataatgttatatctatgcatgacattctacaggaaatgggtcgcgaggttgttcg |
13397256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 7081508 - 7081381
Alignment:
| Q |
34 |
gtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtttcgatctgatagtagaat |
133 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||| ||||| | || |||| || ||| ||||||| |||||||||||| || | | ||||||||| |
|
|
| T |
7081508 |
gtcgtatgaaggttcttgttgttcttgacgatgtcaaggatccacaacaattagaaattttaattggaacacttgattggtttggaacaggtagtagaat |
7081409 |
T |
|
| Q |
134 |
aattttaacaactagagataagcaagta |
161 |
Q |
| |
|
||| ||||||||| ||||||||||||| |
|
|
| T |
7081408 |
cattgtaacaactaaagataagcaagta |
7081381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 7092901 - 7092768
Alignment:
| Q |
27 |
aggattggtcgtatgaaggttcttattgttcttgatgatgttaaggaagaaagtcagctagagatgttatttggaactcttgattggtttcgatctgata |
126 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| ||||| || || | | || |||| | ||| ||||||| ||||||||||| || | |||| |
|
|
| T |
7092901 |
aggattcgtcgtatgaaggttcttattgttcttgacgatgtcaatgattcacgacaagtagaaactttaattggaacacttgattggttaggaacagata |
7092802 |
T |
|
| Q |
127 |
gtagaataattttaacaactagagataagcaagt |
160 |
Q |
| |
|
||||||| ||| ||||||||| |||||| ||||| |
|
|
| T |
7092801 |
gtagaatcattataacaactaaagataaacaagt |
7092768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 311
Target Start/End: Original strand, 7031024 - 7031071
Alignment:
| Q |
264 |
catcttgaaatggagtactatgatctatcaaagaaggtggtcgattat |
311 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
7031024 |
catctcgaaatggagtactatgagctatcaaagaagatggtcgattat |
7031071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 232 - 311
Target Start/End: Complemental strand, 7075264 - 7075182
Alignment:
| Q |
232 |
agcttttcaatttgaatgcctttaa---acaaagtcatcttgaaatggagtactatgatctatcaaagaaggtggtcgattat |
311 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||| ||||||||||||||||||||| | ||||||||||| |||| |||||| |
|
|
| T |
7075264 |
agcttttcaacttgcatgcctttaataaacaaaagcatcttgaaatggagtactataagctatcaaagaaaatggtggattat |
7075182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 7036514 - 7036545
Alignment:
| Q |
39 |
atgaaggttcttattgttcttgatgatgttaa |
70 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
7036514 |
atgaaggttcttattgttcttgatgatgttaa |
7036545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 572 - 650
Target Start/End: Original strand, 7037045 - 7037123
Alignment:
| Q |
572 |
ttagaaaggttaaaagataaatctcttataactatttctgaagataatgttatatctatgcatgacattctacaagaaa |
650 |
Q |
| |
|
||||| ||| ||||||||||| ||||| ||||||||||| || | | | || |||| |||||||||||| ||||||||| |
|
|
| T |
7037045 |
ttagacaggctaaaagataaagctcttgtaactatttctcaataaattattgtatcaatgcatgacattatacaagaaa |
7037123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 7012932 - 7012976
Alignment:
| Q |
23 |
gagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
67 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
7012932 |
gagaaggctttgtcgtatgaaggttcttgttgttcttgacgatgt |
7012976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 7023416 - 7023444
Alignment:
| Q |
39 |
atgaaggttcttattgttcttgatgatgt |
67 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7023416 |
atgaaggttcttattgttcttgatgatgt |
7023444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 67
Target Start/End: Complemental strand, 7075448 - 7075420
Alignment:
| Q |
39 |
atgaaggttcttattgttcttgatgatgt |
67 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7075448 |
atgaaggttcttattgttcttgatgatgt |
7075420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 42858726 - 42858671
Alignment:
| Q |
105 |
cttgattggtttcgatctgatagtagaataattttaacaactagagataagcaagt |
160 |
Q |
| |
|
|||||||||||| |||||| ||||||||| || ||||||| |||||||||||||| |
|
|
| T |
42858726 |
cttgattggtttggatctggtagtagaatcatcgtaacaaccagagataagcaagt |
42858671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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