View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8471_high_4 (Length: 396)
Name: NF8471_high_4
Description: NF8471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8471_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 27 - 386
Target Start/End: Complemental strand, 10090663 - 10090304
Alignment:
| Q |
27 |
ttatattaaagttatcaacaacaatacaaacttttatgtagtaaacctctttatctagcttcctgcattatttagcagcacagtattttatatgtctgtg |
126 |
Q |
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| T |
10090663 |
ttatattaaagttatcaacaacaatacaaacttttatgtagtaaacctctttatctagcttcctgcattatttagcagcacagtattttatatgtctgtg |
10090564 |
T |
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| Q |
127 |
tgaagagaaacatatatagaacttgtagagggtcttcttcaaccttgtgatgcttaggttagcaacatccttcttcacaacatactttgccacaatggat |
226 |
Q |
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| T |
10090563 |
tgaagagaaacatatatagaacttgtagagggtcttcttcaaccttgtgatgcttaggttaacaacatccttcttcacaatatactttgccacaatggat |
10090464 |
T |
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| Q |
227 |
cagtggcttccatatgaaccagcaacagcgacagcctttgcagaaaaatgtcaataacagttactttaagcttaatcaattcttgaatgtcattagaaat |
326 |
Q |
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| T |
10090463 |
ctgtggcttccatatgaaccagcaacagcgacaacctttgcagaaaaatgtcaataacagttactttgagcttaatcaaatcttgaatgtcattagaaat |
10090364 |
T |
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| Q |
327 |
taatgataacaatgagtgcaaaaacataatttaccttgaggataatataccatgttcttc |
386 |
Q |
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| T |
10090363 |
taatgataacaatgagtgcaaaaacataatttaccttgaggataataaaccatgttcttc |
10090304 |
T |
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