View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8471_high_6 (Length: 315)
Name: NF8471_high_6
Description: NF8471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8471_high_6 |
 | |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 36411860 - 36412165
Alignment:
| Q |
17 |
aagttcctgatatatctggggcagttgccatagatggtttgactttggatgaatgtgagaaagattgcttgagaaattgttcttgtaatgcctatgcagt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36411860 |
aagttcctgatatatctggggcagttgccatagatggtttgactttggaagaatgtgagaaagattgcttgagaaactgttcttgtaatgcctatgcagt |
36411959 |
T |
|
| Q |
117 |
tgctgatgtgaggaatggtggtagtggatgtttgacgtggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36411960 |
tgctgatgtgaggaatggtggtagtggatgtttgacgtggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgc |
36412059 |
T |
|
| Q |
217 |
gtcgagaaagttgaacttggtaagatattccctcctactg-------nnnnnnnngtttataaatttgacaccacttttaagtgtagtttaaacttcttt |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36412060 |
gtcgagaaagttgaacttggtaagatattccctcctactgtttttttttttttttgtttataaatttgacaccacttttaagtgtagtttaaacttcttt |
36412159 |
T |
|
| Q |
310 |
ggactt |
315 |
Q |
| |
|
|||||| |
|
|
| T |
36412160 |
ggactt |
36412165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 36417191 - 36417496
Alignment:
| Q |
17 |
aagttcctgatatatctggggcagttgccatagatggtttgactttggatgaatgtgagaaagattgcttgagaaattgttcttgtaatgcctatgcagt |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
36417191 |
aagttcctgatatatctggggcagttgccatagatggtttgactttggaagaatgtgagaaagattgcttgagaaactgttcttgtaatgcctatgcagt |
36417290 |
T |
|
| Q |
117 |
tgctgatgtgaggaatggtggtagtggatgtttgacgtggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36417291 |
tgctgatgtgaggaatggtggtagtggatgtttgacgtggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgc |
36417390 |
T |
|
| Q |
217 |
gtcgagaaagttgaacttggtaagatattccctcctactg-------nnnnnnnngtttataaatttgacaccacttttaagtgtagtttaaacttcttt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36417391 |
gtcgagaaagttgaacttggtaagatattccctcctactgtttttttttttttttgtttataaatttgacaccacttttaagtgtagtttaaacttcttt |
36417490 |
T |
|
| Q |
310 |
ggactt |
315 |
Q |
| |
|
|||||| |
|
|
| T |
36417491 |
ggactt |
36417496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 36397613 - 36397852
Alignment:
| Q |
17 |
aagttcctgatatatctggggcagttgccatagatggtttgactttggatgaatgtgagaaagattgcttgagaaattgttcttgtaatgcctatgcagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| || || |||| | |||||||||| |
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| T |
36397613 |
aagttcctgatatatctggggcagttaccatagatggtttgagtttggatgaatgtgagaaagaatgcttgagaaactgctcctgtacttcctatgcagt |
36397712 |
T |
|
| Q |
117 |
tgctgatgtgaggaatggtggtagtggatgtttgacgtggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgc |
216 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |
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| T |
36397713 |
agccgatgtgaggaatggtggtagtggatgtttggcatggcatggggatttaatggacattcaaaaacttagtgatcaaggccaagatttatatttgcgc |
36397812 |
T |
|
| Q |
217 |
gtcgagaaagttgaacttggtaagatattccctcctactg |
256 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |
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| T |
36397813 |
gtcgataaagttgaacttggtaagatattccctcctactg |
36397852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 36404546 - 36404788
Alignment:
| Q |
17 |
aagttcctgatatatctggggcagttgccatagatggtttgactttggatgaatgtgagaaagattgcttgagaaattgttcttgtaatgcctatgcagt |
116 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||| |||||||||||| |
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|
| T |
36404546 |
aagttgctgatatatctggagcagttgccatagatggtttgagtttggaagaatgtgagaaagaatgcttgagaaattgctcttgtactgcctatgcagt |
36404645 |
T |
|
| Q |
117 |
tgctgatgtgaggaatggtggtagtggatgtttgacgtggcatgggaatttaatggacattcaaaaacttagta---atcagggccaagatttatttttg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
36404646 |
tgctgatgtgaggaatggtggtagtggatgtttggcatggcatggggatttaatggacattcaaaaacttagtagtgatcaaggccaagatttattttta |
36404745 |
T |
|
| Q |
214 |
cgcgtcgagaaagttgaacttggtaagatattccctcctactg |
256 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||||||||||| |
|
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| T |
36404746 |
cgcgtcgataaagttgaactaggtaagatatcccctcctactg |
36404788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 36 - 315
Target Start/End: Original strand, 36426045 - 36426321
Alignment:
| Q |
36 |
ggcagttgccatagatggtttgactttggatgaatgtgagaaagattgcttgagaaattgttcttgtaatgcctatgcagttgctgatgtgaggaatggt |
135 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || ||||||| |||||||||||||||||| |||| ||||||| |
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| T |
36426045 |
ggcagttgccatagatggtttgaatttggatgaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagttgctgacgtgaagaatggt |
36426144 |
T |
|
| Q |
136 |
ggtagtggatgtttgacgtggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgcgtcgagaaagttgaacttg |
235 |
Q |
| |
|
|| |||||||||||| | ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||||||||||| | |
|
|
| T |
36426145 |
ggaagtggatgtttggcatggcatggggatttaatggacattcaaaaacttagtgatcaaggccaagatttatttttacgcgtcgctaaagttgaactag |
36426244 |
T |
|
| Q |
236 |
gtaagatattccctcctactgnnnnnnnngtttataaatttgacaccacttttaagtgtagtttaaacttctttggactt |
315 |
Q |
| |
|
||||||| ||||||||| ||| || ||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
36426245 |
gtaagattttccctcctgctggttttttc-ttgctaaatttgacaccac--ttatgtgtagtttaaacttctttggactt |
36426321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 36387834 - 36388070
Alignment:
| Q |
17 |
aagttcctgatatatctggggcagttgccatagatggtttgactttggatgaatgtgagaaagattgcttgagaaattgttcttgtaatgcctatgcagt |
116 |
Q |
| |
|
|||||||||||| ||||| ||||||||| | | |||||||| |||||| |||||||||||||| |||||| ||| |||||||||| ||||||| || | |
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| T |
36387834 |
aagttcctgatacatctgtggcagttgctaaaagtggtttgagtttggaagaatgtgagaaagaatgcttgcaaaactgttcttgtactgcctattcaat |
36387933 |
T |
|
| Q |
117 |
tgctgatgtgaggaatggtggtagtggatgtttgacgtggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgc |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| | ||||||||| ||||||| |||||||||||||||| | |||| ||||||||||||||| | ||| |
|
|
| T |
36387934 |
tgctgatgtgaggaatggtggaagtggatgtttggcatggcatggggatttaatagacattcaaaaacttaatgatcaaggccaagatttatttctacgc |
36388033 |
T |
|
| Q |
217 |
gtcgagaaagttgaacttggtaagatattccctccta |
253 |
Q |
| |
|
||||| ||| ||||||| |||||||||| | |||||| |
|
|
| T |
36388034 |
gtcgataaaattgaactaggtaagatatacactccta |
36388070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 36369255 - 36369457
Alignment:
| Q |
17 |
aagttcctgatatatctggggcagttgccatagatggtttgactttggatgaatgtgagaaagattgcttgagaaattgttcttgtaatgcctatgcagt |
116 |
Q |
| |
|
||||||| |||| ||||| ||| ||||| | || |||||||| |||||| |||||||||||||| ||||||||||| || ||||||| |||||||||||| |
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|
| T |
36369255 |
aagttcccgatacatctgtggcggttgctaaaggtggtttgagtttggaagaatgtgagaaagaatgcttgagaaactgctcttgtactgcctatgcagt |
36369354 |
T |
|
| Q |
117 |
tgctgatgtgaggaatggtggtagtggatgtttgacgtggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgc |
216 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| | ||||||||| ||||||||||| |||| |||||||| |||| ||||| ||||||||||| ||| |
|
|
| T |
36369355 |
tgctgatgtgaggaatggtggaagtggttgtttggcatggcatggggatttaatggacgttcagaaacttagcgatcaaggccaggatttatttttacgc |
36369454 |
T |
|
| Q |
217 |
gtc |
219 |
Q |
| |
|
||| |
|
|
| T |
36369455 |
gtc |
36369457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 36373874 - 36374102
Alignment:
| Q |
17 |
aagttcctgatatatctggggcagttgccatagatggtttgactttggatgaatgtgagaaagattgcttgagaaattgttcttgtaatgcctatgcagt |
116 |
Q |
| |
|
|||||||||||||||||| ||||||| | | || |||| ||| |||||| ||||| ||| |||| ||||||||||| || ||||||| | |||||||||| |
|
|
| T |
36373874 |
aagttcctgatatatctgtggcagttactaaaggtggtctgagtttggaagaatgcgaggaagaatgcttgagaaactgctcttgtacttcctatgcagt |
36373973 |
T |
|
| Q |
117 |
tgctgatgtgaggaatggtggtagtggatgtttgacgtggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgc |
216 |
Q |
| |
|
|||||||||||| |||||||| ||||| |||||| | ||| ||||| |||||||||||||||||||||||||| |||| ||||||||||||||| | || |
|
|
| T |
36373974 |
tgctgatgtgagtaatggtggaagtggctgtttggcatggtatggggatttaatggacattcaaaaacttagtgatcaaggccaagatttatttgtacgt |
36374073 |
T |
|
| Q |
217 |
gtcgagaaagttgaacttggtaagatatt |
245 |
Q |
| |
|
||||| ||||||||| |||||| |||| |
|
|
| T |
36374074 |
gtcgatgcagttgaactaggtaaggtatt |
36374102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 36433883 - 36434122
Alignment:
| Q |
17 |
aagttcctgatatatctggggcagttgccatagatggtttgactttggatgaatgtgagaaagattgcttgagaaattgttcttgtaatgcctatgcagt |
116 |
Q |
| |
|
|||||||||||| ||| |||| ||||| || |||||||| |||||| |||||||| ||||| ||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
36433883 |
aagttcctgatacatcgatggcaaatgccaaaggtggtttgagtttggaagaatgtgaaaaagaatgcttcagaaactgttcttgtacagcctatgcagt |
36433982 |
T |
|
| Q |
117 |
tgctgatgtgaggaatggtggtagtggatgtttgacgtggcatgggaatttaatggacattcaaaaacttagtaatcagggccaagatttatttttgcgc |
216 |
Q |
| |
|
|| | ||||||| |||||||| || || |||||| | |||||||| |||||||||||||||||||| | || |||| ||||||||||||||||| || |
|
|
| T |
36433983 |
tgataatgtgagcaatggtggaagcgggtgtttggcatggcatggtgatttaatggacattcaaaaagtaagcgatcaaggccaagatttatttttacgt |
36434082 |
T |
|
| Q |
217 |
gtcgagaaagttgaacttggtaagatattccctcctactg |
256 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||||| ||||| |
|
|
| T |
36434083 |
gtcgataaagttgaactaggtaagaaattccctcttactg |
36434122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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