View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8471_low_10 (Length: 283)
Name: NF8471_low_10
Description: NF8471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8471_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 33367676 - 33367412
Alignment:
| Q |
17 |
actttccggcagcttcagggagaatgtcggcaatatttactgcggcagtgttagctcgtagcaagaaagtgggaaaaactcacgtttttgttcatgattt |
116 |
Q |
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| T |
33367676 |
actttccggcagctccagggagaatgtcggcaatatttactgcggcagtgttagctcgtagcaagaaagtgggaaaaactcacgtttttgttcatgattt |
33367577 |
T |
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| Q |
117 |
ttggagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggttaacaatgtagatcagttaaggcattttgtgataaagagtgaa |
216 |
Q |
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| T |
33367576 |
ttggagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggttaacaatgtagatcagttaaggcattttgtgataaagagtgaa |
33367477 |
T |
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| Q |
217 |
accgaaaatggtgagagttttgagttttgcaaaagttcgagctcccagtaaaattgtgtaggagta |
282 |
Q |
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| T |
33367476 |
accgaaaatggtgagagttttgagttttgcaaaagttcaagc-cccagtaaaattgtgtaggagta |
33367412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 33371877 - 33371640
Alignment:
| Q |
17 |
actttccggcagcttcagggagaatgtcggcaatatttactgcggcagtgttagctcgtagcaagaaagtgggaaaaactcacgtttttgttcatgattt |
116 |
Q |
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|||||||||||||| | |||||||||||||| || ||||| || |||||||| ||| | ||||||||| |||||||||||||| | |||||||||||||| |
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| T |
33371877 |
actttccggcagctccggggagaatgtcggcgatctttacagcagcagtgttggctaggagcaagaaaatgggaaaaactcacatatttgttcatgattt |
33371778 |
T |
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| Q |
117 |
ttggagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggttaacaatgtagatcagttaaggcattttgtgataaagagtgaa |
216 |
Q |
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| T |
33371777 |
tggaagagaagtggagaagattttcagctatgagtttctttgtgaagagaatttggttaacaatgtagatcagttagggcattttgtggtgaagagtgaa |
33371678 |
T |
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| Q |
217 |
accgaaaatggtgagagttttgagttttgcaaaagttc |
254 |
Q |
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||||| | |||||| |||| ||||||||||| |||||| |
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| T |
33371677 |
accgacagtggtgaaagttctgagttttgcagaagttc |
33371640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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