View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8471_low_15 (Length: 227)
Name: NF8471_low_15
Description: NF8471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8471_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 22353796 - 22353682
Alignment:
| Q |
1 |
caagacaaaattagtataaacatgaatcaatggtattagatttttacctagttactcgtcaagtgattcagttgcaaactcctcgagaccattcaaatat |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
22353796 |
caagacaaaattagtataaacatgaaacaatggtattagatttttacctagttactcgtcaagggattcagctgcaaactcctcgagaccattcaaatat |
22353697 |
T |
|
| Q |
101 |
gacatttctaatgac |
115 |
Q |
| |
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||||||||||||||| |
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| T |
22353696 |
gacatttctaatgac |
22353682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 22353606 - 22353567
Alignment:
| Q |
179 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
22353606 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
22353567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 26071947 - 26072061
Alignment:
| Q |
1 |
caagacaaaattagtataaacatgaatcaatggtattagatttttacctagttactcgtcaagtgattcagttgcaaactcctcgagaccattcaaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
26071947 |
caagacaaaattagtataaacatgaaacaatggtattagatttttacctagttactcgtcaagggattcagctgcaaactcctcgagaccattcaaatat |
26072046 |
T |
|
| Q |
101 |
gacatttctaatgac |
115 |
Q |
| |
|
||||||||||||||| |
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|
| T |
26072047 |
gacatttctaatgac |
26072061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 26072137 - 26072176
Alignment:
| Q |
179 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26072137 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
26072176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1671755 - 1671641
Alignment:
| Q |
1 |
caagacaaaattagtataaacatgaatcaatggtattagatttttacctagttactcgtcaagtgattcagttgcaaactcctcgagaccattcaaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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|
| T |
1671755 |
caagacaaaattagtataaacatgaaacaatggtattagatttttacctagttactcgtcaagggattcagctgcaaactcctcgagaccattcaaatat |
1671656 |
T |
|
| Q |
101 |
gacatttctaatgac |
115 |
Q |
| |
|
||||||||||||||| |
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|
| T |
1671655 |
gacatttctaatgac |
1671641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 44270735 - 44270849
Alignment:
| Q |
1 |
caagacaaaattagtataaacatgaatcaatggtattagatttttacctagttactcgtcaagtgattcagttgcaaactcctcgagaccattcaaatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |
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|
| T |
44270735 |
caagacaaaattagtataaacatgaaacaatggtattagatttttacctagttactcgtcaagggattcagctgcaaactcctcgagaccattcaaatat |
44270834 |
T |
|
| Q |
101 |
gacatttctaatgac |
115 |
Q |
| |
|
||||||||||||||| |
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|
| T |
44270835 |
gacatttctaatgac |
44270849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Complemental strand, 1671565 - 1671526
Alignment:
| Q |
179 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1671565 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
1671526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 179 - 218
Target Start/End: Original strand, 44270925 - 44270964
Alignment:
| Q |
179 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44270925 |
tgtttcaaattccagcacatcaaatgctttactttcatct |
44270964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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