View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8471_low_6 (Length: 317)
Name: NF8471_low_6
Description: NF8471
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8471_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 21 - 302
Target Start/End: Complemental strand, 24984648 - 24984370
Alignment:
| Q |
21 |
aaacgtcttctacaagcctccgaaatctgcatgatcaaaccacattttataaaattttaaagaggaaaggtgtacatttcttcaatatccaacgggaaaa |
120 |
Q |
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| T |
24984648 |
aaacgtcttctacaagcctccgaaatctgcatgatcaaaccacattttataaaaatttaaagaggaaaggtgtacatttcttcaatatccaaagggaaaa |
24984549 |
T |
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| Q |
121 |
tggtcagattgacttctctgaagtgcaacaagaaatgatatgagattagaagacaactcgagccacaattggcgtctaatgagatgagaagtcgagcata |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24984548 |
tggtcagattgacttctctgaagtgcaacaagaaatgatatgagat---gagacaactcgagccacaattggcatctaatgagatgagaagtcgagcata |
24984452 |
T |
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| Q |
221 |
aatggccgagatgaaaatcatttcgaaatcaaccattttagagaatgaacaaatcactggccgacttacacacactgtagta |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24984451 |
aatggccgagatgaaaatcatttcgaaatcaaccattttagagaatgaacaaatcactggccgacttacacacactgtagta |
24984370 |
T |
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