View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8472_low_4 (Length: 239)
Name: NF8472_low_4
Description: NF8472
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8472_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 1727153 - 1726968
Alignment:
| Q |
3 |
tcctcttaagaggtgcttctactgagaaactaattcattctcctttgtttcatgcttgttcagaggtttatcagctttctcttgagtatatgaaatttga |
102 |
Q |
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| T |
1727153 |
tcctcttaagcggtgcttctactgagaaactaattcattcttctttgtttcatgcttgttcagaggtttatcagctttctcttgagtatatgaaatttga |
1727054 |
T |
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| Q |
103 |
catctctctag-attacctcatcaagagattttcattccatatactcagagtcttagattcctctgccactaaatcatatttcctttgt |
190 |
Q |
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| T |
1727053 |
catttctctagaattacctcatcaagaga---tcattccatatactcagagtcttagattcctctgccactaaatcatatttcctttgt |
1726968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 15668903 - 15668857
Alignment:
| Q |
51 |
ttcatgcttgttcagaggtttatcagctttctcttgagtatatgaaa |
97 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
15668903 |
ttcatgcttgttcagaggtttatcagcttttttctgagtatatgaaa |
15668857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 15668808 - 15668760
Alignment:
| Q |
142 |
tatactcagagtcttagattcctctgccactaaatcatatttcctttgt |
190 |
Q |
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| T |
15668808 |
tatactcagagtcttagattcctttgtcaccaaatcatattgcctttgt |
15668760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 20093931 - 20093975
Alignment:
| Q |
8 |
ttaagaggtgcttctactgagaaactaattcattctcctttgttt |
52 |
Q |
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|||||||||| |||| ||||||||||||||| ||||||||||||| |
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| T |
20093931 |
ttaagaggtgtttcttctgagaaactaattccttctcctttgttt |
20093975 |
T |
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