View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8473_high_1 (Length: 704)

Name: NF8473_high_1
Description: NF8473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8473_high_1
NF8473_high_1
[»] chr2 (5 HSPs)
chr2 (354-704)||(2410788-2411125)
chr2 (186-328)||(2411123-2411261)
chr2 (108-194)||(2412488-2412574)
chr2 (13-75)||(2412574-2412637)
chr2 (13-51)||(11059030-11059068)
[»] chr6 (8 HSPs)
chr6 (13-52)||(14966078-14966117)
chr6 (13-52)||(32821263-32821302)
chr6 (13-51)||(5619181-5619219)
chr6 (13-51)||(14270195-14270233)
chr6 (13-51)||(14968783-14968821)
chr6 (13-51)||(31261866-31261904)
chr6 (13-53)||(13174440-13174480)
chr6 (13-53)||(13182973-13183013)
[»] chr8 (2 HSPs)
chr8 (13-51)||(17992464-17992502)
chr8 (13-54)||(5963442-5963483)
[»] chr3 (2 HSPs)
chr3 (13-51)||(25889371-25889409)
chr3 (13-59)||(19305509-19305555)
[»] chr5 (4 HSPs)
chr5 (13-52)||(28566852-28566891)
chr5 (13-51)||(1811321-1811359)
chr5 (13-51)||(28563284-28563322)
chr5 (13-51)||(40800685-40800723)
[»] scaffold1832 (1 HSPs)
scaffold1832 (13-51)||(639-677)
[»] chr7 (2 HSPs)
chr7 (13-51)||(5827613-5827651)
chr7 (17-51)||(26809706-26809740)
[»] chr4 (2 HSPs)
chr4 (13-51)||(18858937-18858975)
chr4 (14-51)||(10246884-10246921)
[»] chr1 (1 HSPs)
chr1 (13-51)||(37640982-37641020)


Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 354 - 704
Target Start/End: Complemental strand, 2411125 - 2410788
Alignment:
Q  354 catttggtctcgggtcgagaccaacctcaagcccaatttcaacctcgaaatgacgaaaagaacccttgaataccgtttcttttattctcttactaccagc 453  Q
    ||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||   ||||    
T  2411125 catttggtctcgggtcgagtccaacctcaagcccaatttgaac-tcgaaatgacgaaaagaacccttgaataccgtttcttttattctcttac---cagc 2411030  T
Q  454 ctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaacttgttgttacaaacaccaaaacaaaaacaacactgtgttac 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2411029 ctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaacttgttgttac-aacaccaaaacaaaaacaacactgtgttac 2410931  T
Q  554 tgtaacacttttcttttgttaacaaaataatgtcagaaaatcgattcttgcctataattgaagaagaggaaatagaaattgacgacgatttctacgagaa 653  Q
    |||||| |        | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410930 tgtaacgc--------tcttaacaaaataatgtcagaaaatcgattcttgcctataattgaagaagaggaaatagaaattgacgacgatttctacgagaa 2410839  T
Q  654 gatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcc 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410838 gatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcc 2410788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 186 - 328
Target Start/End: Complemental strand, 2411261 - 2411123
Alignment:
Q  186 atgtatctatcatacatatacattaggggtaaaacagttttccgaagataactttcaaacccttcggctatgtatgtatatattatggataaaaacagaa 285  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    ||||||||||| |||||||||||||    
T  2411261 atgtatctatcatacatatacattacgggtaaaacagttttccgaagataactttcaaacccttcggctat----gtatatattatagataaaaacagaa 2411166  T
Q  286 tttcggggtccaagagatattgagaagtgtaaaaagaaatcat 328  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2411165 tttcggggtccaagagatattgagaagtgtaaaaagaaatcat 2411123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 2412574 - 2412488
Alignment:
Q  108 cgatcaccgctatattttgtgcctaaaaggaagataattatttcaccactctgggagataattcccgaaacttttgggatgtatcta 194  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  2412574 cgatcaccactatattttgtgcataaaaggaagataattatttcaccactctagaagataattcccgaaacttttgggatgtatcta 2412488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 2412637 - 2412574
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatcaaaaa-cttcttccaaaaacatcaac 75  Q
    ||||||||||||||||| |||||||| ||||||| |||||||| ||||||  | ||||||||||    
T  2412637 aaaaagactctaaaaatgtgatatgatggactgtcatcaaaaagcttcttttagaaacatcaac 2412574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 11059068 - 11059030
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  11059068 aaaaagactctaaaaatgtgatatgacggactgtcatca 11059030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 14966117 - 14966078
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatcaa 52  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  14966117 aaaaagactctaaaaatatgatatgacggactgtcatcaa 14966078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 32821302 - 32821263
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatcaa 52  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  32821302 aaaaagactctaaaaatgtgatatgacggactgtcatcaa 32821263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 5619181 - 5619219
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    ||||| |||||||||||||||||||||||||||| ||||    
T  5619181 aaaaatactctaaaaatatgatatgacggactgtcatca 5619219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 14270233 - 14270195
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  14270233 aaaatgactctaaaaatatgatatgacggactgtcatca 14270195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 14968821 - 14968783
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  14968821 aaaaagactctaaaaatgtgatatgacggactgtcatca 14968783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 31261904 - 31261866
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  31261904 aaaaagactctaaaaatgtgatatgacggactgtcatca 31261866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 13174440 - 13174480
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatcaaa 53  Q
    |||||||||| |||||| |||||||||||||||| ||||||    
T  13174440 aaaaagactcaaaaaatgtgatatgacggactgtcatcaaa 13174480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 13182973 - 13183013
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatcaaa 53  Q
    |||||||||| |||||| |||||||||||||||| ||||||    
T  13182973 aaaaagactcaaaaaatgtgatatgacggactgtcatcaaa 13183013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 17992502 - 17992464
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  17992502 aaaaagactctaaaaatatgatatgacggactgttatca 17992464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 5963483 - 5963442
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatcaaaa 54  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  5963483 aaaaagactctaaaaatgtgatatgacggactgtcatcaaaa 5963442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 25889371 - 25889409
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  25889371 aaaaagactctaaaaatatgatatgacggactgtcatca 25889409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 19305509 - 19305555
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatcaaaaacttc 59  Q
    ||||||||||||||||||||| |||| ||| ||| ||||||||||||    
T  19305509 aaaaagactctaaaaatatgaaatgatggattgtcatcaaaaacttc 19305555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 28566852 - 28566891
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatcaa 52  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  28566852 aaaaagactctaaaaatgtgatatgacggactgtcatcaa 28566891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 1811321 - 1811359
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  1811321 aaaaagactctaaaaatatgatatgatggactgtcatca 1811359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 28563284 - 28563322
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  28563284 aaaaagactctaaaaatgtgatatgacggactgtcatca 28563322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 40800685 - 40800723
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  40800685 aaaaagactctaaaaatgtgatatgacggactgtcatca 40800723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1832 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold1832
Description:

Target: scaffold1832; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 639 - 677
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  639 aaaaagactctaaaaatgtgatatgacggactgtcatca 677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 5827613 - 5827651
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  5827613 aaaaagactctaaaaatgtgatatgacggactgtcatca 5827651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 51
Target Start/End: Original strand, 26809706 - 26809740
Alignment:
Q  17 agactctaaaaatatgatatgacggactgtaatca 51  Q
    |||||||||||||||||||||||||||||| ||||    
T  26809706 agactctaaaaatatgatatgacggactgtcatca 26809740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 18858975 - 18858937
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  18858975 aaaaagactctaaaaatgtgatatgacggactgtcatca 18858937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 10246921 - 10246884
Alignment:
Q  14 aaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  10246921 aaaagactctaaaaatgtgatatgacggactgtcatca 10246884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 37641020 - 37640982
Alignment:
Q  13 aaaaagactctaaaaatatgatatgacggactgtaatca 51  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  37641020 aaaaagactctaaaaatgtgatatgacggactgtcatca 37640982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University