View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8473_high_6 (Length: 246)
Name: NF8473_high_6
Description: NF8473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8473_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 5752649 - 5752868
Alignment:
| Q |
19 |
gtcgtaccatactaaatggttcaaacttgccaagaagttgaggatttagattactgtatttgaactcttcaagattcctaataaatgtaatgttttttaa |
118 |
Q |
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| T |
5752649 |
gtcgtaccatactgaatggttcaagcttgccaagcagtcgaggatttagattactgtgtttgaactcttcaagattcctaataaatgtaatgttttttac |
5752748 |
T |
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| Q |
119 |
tcaagactgtatgctgagttgagcttacatagctgcaattcggtgaagtttatatataccattttgtactactcaattacttggcttttggttttccaac |
218 |
Q |
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| T |
5752749 |
tcaagactgtatactgagttgagcttacatagctgcaatgcggtgaagtttatttataccattctgtactacttaattacttggtttttggttttccaac |
5752848 |
T |
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| Q |
219 |
aactgtgttgtatctctgct |
238 |
Q |
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| T |
5752849 |
aattgtgctgtatctttgct |
5752868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 23 - 181
Target Start/End: Original strand, 5756567 - 5756725
Alignment:
| Q |
23 |
taccatactaaatggttcaaacttgccaagaagttgaggatttagattactgtatttgaactcttcaagattcctaataaatgtaatgttttttaatcaa |
122 |
Q |
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||||||||| |||||||||| ||| ||| ||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5756567 |
taccatactgaatggttcaagcttttaaagcagtcgaggatttagatttctgtagttgaactcttcaagattcctaataaatgtaatgttttttactcaa |
5756666 |
T |
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| Q |
123 |
gactgtatgctgagttgagcttacatagctgcaattcggtgaagtttatatataccatt |
181 |
Q |
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| T |
5756667 |
gactgtatgctgagttgagcttacatagctgcaatgcggtgaagtttatatataccatt |
5756725 |
T |
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