View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8473_low_2 (Length: 495)
Name: NF8473_low_2
Description: NF8473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8473_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 43875331 - 43875811
Alignment:
| Q |
1 |
gccagagcaattcagaattcattgttctcaagaatatgatgctgcctggtgcctagaagactagcaccattcagaaactaatgctgatgctattccactg |
100 |
Q |
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| T |
43875331 |
gccagagcaattcagaattcattgttctcaagaatatgatgctgcctggtgcctagaagactagcaccattcagaaactaatgctgatgctatttcactg |
43875430 |
T |
|
| Q |
101 |
tttcatttgttttttgaatgcaatgcatttactatcatcaatacaacacttattttgaaaccaaaacagtactcagaaaaacataacaaataacaaagac |
200 |
Q |
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| T |
43875431 |
ttttatttgttttttgaatgcaatgcatttactatcatcaatacaacacttattttgaaaccaaaacagtactcagaaaaacataacaaataacaaagac |
43875530 |
T |
|
| Q |
201 |
aactagtcaatttgggggaaaacatcattactctgtctggcttgaaaactcacctaaccagtcttagttttctatttatttctagaatccggcatctttt |
300 |
Q |
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| T |
43875531 |
aactagtcaatttgggggaaaacatcattactctgtctggcttgaaaactcacctaaccagtcttagttttctatttatttctagaatccggcatctttt |
43875630 |
T |
|
| Q |
301 |
gcgcgcgactaatctcttgagtcggataggatcgcattgaggggcaaagctcttcctaatccgtcttagtttgttgcacaatatccaacaaaaaatcggt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
43875631 |
gcgcgcgactaatctcttgagtcggataggatcgcattgaggggcaaagctcttcctaatccgtcttagtttgttgcacaacatccaacaaaaaatcggt |
43875730 |
T |
|
| Q |
401 |
gaaaaaaggctcaaaagatggcaatttagcatacccaggaaagtaattgatatcaatcacaagataccttctgggattttt |
481 |
Q |
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| T |
43875731 |
gaaaaaaggctcaaaagatggcaatttagcatacccaggaaagtaattgatatcaatcacaagataccttctgggattttt |
43875811 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 468
Target Start/End: Original strand, 27736433 - 27736481
Alignment:
| Q |
420 |
ggcaatttagcatacccaggaaagtaattgatatcaatcacaagatacc |
468 |
Q |
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|||| |||||||||||| ||||||||||| |||||||| | |||||||| |
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| T |
27736433 |
ggcattttagcataccctggaaagtaattaatatcaataataagatacc |
27736481 |
T |
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