View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8473_low_3 (Length: 383)
Name: NF8473_low_3
Description: NF8473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8473_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 138 - 364
Target Start/End: Original strand, 41874480 - 41874708
Alignment:
| Q |
138 |
gcattattaccatctatacaacaaatttaatatatgaaaaattaattaaacaaaaccatttcattgttctcctcaaaacacaatgatctcaaatatcaat |
237 |
Q |
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| T |
41874480 |
gcattattaccatctatacaacaaatttaatatatgaaaaattaattaaacaaaaccatttcattgttctcctcaaaacacaatgatctcaaatattaat |
41874579 |
T |
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| Q |
238 |
at--atatgctacgaattacaaaacaaatttttcttctttctccacaattctcactccttttgcagatctgagcacattgacctgtttgaatgtataaca |
335 |
Q |
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| T |
41874580 |
atatatatgctaagaattacaaaacaaatttttcttctttctccacaattctcactctttttgcagatctgagcacattgacctgtttgaaggtataaca |
41874679 |
T |
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| Q |
336 |
tgttaattaagaaaaggaaaacatcatag |
364 |
Q |
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| T |
41874680 |
tgttaattaagaaaaggaaaacatcatag |
41874708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 15 - 140
Target Start/End: Original strand, 41874245 - 41874370
Alignment:
| Q |
15 |
attctaccaaaaacaataacttaattttnnnnnnntactaatgagtaagggtactgttaaagtgaaaaatagaactattgtggacggtgataaaatatag |
114 |
Q |
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| T |
41874245 |
attctaccaaaaacaataacttaattttaaaaaaatagtaatgagtaagggtactgttaaagtgaaaaatagaactattgtggacggtgataaaatatag |
41874344 |
T |
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| Q |
115 |
tgaattcaactgttatttgtaatgca |
140 |
Q |
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| T |
41874345 |
tgaattcaactgttatttgtaatgca |
41874370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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