View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8473_low_5 (Length: 324)

Name: NF8473_low_5
Description: NF8473
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8473_low_5
NF8473_low_5
[»] chr4 (8 HSPs)
chr4 (19-305)||(4113931-4114217)
chr4 (155-199)||(7209259-7209303)
chr4 (155-199)||(30666897-30666941)
chr4 (155-195)||(54933155-54933195)
chr4 (158-195)||(49716115-49716152)
chr4 (154-195)||(55550536-55550577)
chr4 (159-195)||(27184099-27184135)
chr4 (155-199)||(30617611-30617655)
[»] chr8 (3 HSPs)
chr8 (158-199)||(2167995-2168036)
chr8 (155-199)||(24456377-24456421)
chr8 (155-195)||(44328520-44328560)
[»] chr3 (6 HSPs)
chr3 (155-208)||(11364821-11364874)
chr3 (155-227)||(11380183-11380259)
chr3 (155-199)||(4228846-4228890)
chr3 (155-195)||(54261848-54261888)
chr3 (158-195)||(37797817-37797854)
chr3 (85-139)||(50170582-50170632)
[»] chr7 (4 HSPs)
chr7 (155-199)||(6271325-6271369)
chr7 (158-199)||(43131950-43131991)
chr7 (171-222)||(10227786-10227840)
chr7 (154-195)||(42239301-42239342)
[»] chr2 (9 HSPs)
chr2 (155-199)||(39187522-39187566)
chr2 (161-199)||(15080158-15080196)
chr2 (155-199)||(4860515-4860559)
chr2 (155-195)||(24256030-24256070)
chr2 (155-266)||(37625000-37625127)
chr2 (155-195)||(21417577-21417617)
chr2 (155-195)||(21418260-21418300)
chr2 (155-195)||(26913475-26913515)
chr2 (155-199)||(34070815-34070859)
[»] chr1 (6 HSPs)
chr1 (155-199)||(43457956-43458000)
chr1 (155-195)||(16650631-16650671)
chr1 (155-199)||(37209858-37209902)
chr1 (161-195)||(49497098-49497132)
chr1 (155-195)||(42489244-42489284)
chr1 (155-195)||(52507550-52507590)
[»] scaffold1173 (1 HSPs)
scaffold1173 (155-208)||(143-196)
[»] scaffold0118 (1 HSPs)
scaffold0118 (155-195)||(19629-19669)
[»] chr6 (8 HSPs)
chr6 (155-195)||(4213305-4213345)
chr6 (82-139)||(15528449-15528502)
chr6 (155-195)||(24202058-24202098)
chr6 (154-195)||(11753011-11753052)
chr6 (229-258)||(15528314-15528343)
chr6 (158-199)||(29383975-29384016)
chr6 (159-195)||(2444076-2444112)
chr6 (154-198)||(15528389-15528433)
[»] chr5 (6 HSPs)
chr5 (155-195)||(10031413-10031453)
chr5 (155-195)||(30341923-30341963)
chr5 (156-195)||(3700316-3700355)
chr5 (156-195)||(3868795-3868834)
chr5 (154-195)||(1866939-1866980)
chr5 (155-191)||(38869947-38869983)
[»] scaffold0770 (1 HSPs)
scaffold0770 (155-195)||(5158-5198)
[»] scaffold0029 (1 HSPs)
scaffold0029 (155-195)||(103456-103496)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 4113931 - 4114217
Alignment:
Q  19 atagtttacgaaaactgtttgtgtaatgttcagctttatttgattcaccaatcactgcgttaaataggaaatgttaacttgtttgggcccttggggcata 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  4113931 atagtttacgaaaactgtttgtgtaatgttcagctttatttgattcaccaatcactgtgttaaataggaaatgttaacttgtttgggtccttggggcata 4114030  T
Q  119 agttaaaaaactaaatgtagannnnnnnnnnng-actttgtgcatttaatatcttaaaagttgcaaaagttatactttcaatttattttttaatttccat 217  Q
    |||||| ||||||||||||||             | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  4114031 agttaagaaactaaatgtagatttttttatttttattttgtgcatttaatatcttaaaagttgcaaaagttatactttcaatttattttt-aattttcat 4114129  T
Q  218 tttaagctccacccttagggcacaagttaacatgaccatatttaaatagcttattatcatgataagcatttatgtttccaaattaagt 305  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4114130 tttaagctccacccttaggacacaagttaacatgaccctatttaaatagcttattatcatgataagcatttatgtttccaaattaagt 4114217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 7209259 - 7209303
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||    
T  7209259 ttgtgcattcaatgtcttaaaagttgcaaaagttatactttcaat 7209303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 30666897 - 30666941
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||| ||| |||||||||||||||||||||||||| ||||    
T  30666897 ttgtgcattcaatgtcttaaaagttgcaaaagttatacttccaat 30666941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 54933155 - 54933195
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  54933155 ttgtgtattcaatatcttaaaagttgcaaaagttatacttt 54933195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 49716152 - 49716115
Alignment:
Q  158 tgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  49716152 tgcatttaatctcttaaaagttgcaaaagttacacttt 49716115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 55550536 - 55550577
Alignment:
Q  154 tttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  55550536 tttgtgcatttaatctcttaaaaattgcaaaagttacacttt 55550577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 27184099 - 27184135
Alignment:
Q  159 gcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  27184099 gcatttaatgtcttaaaaattgcaaaagttatacttt 27184135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 30617655 - 30617611
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||| ||| ||||||||||| |||||||||| ||||||||    
T  30617655 ttgtgcattcaatctcttaaaagtttcaaaagttatcctttcaat 30617611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 2167995 - 2168036
Alignment:
Q  158 tgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  2167995 tgcatttaatatcttaaaatttgcaaaagttatactttcaat 2168036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 24456421 - 24456377
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||| ||| | |||||||||||||||||||||||||||||    
T  24456421 ttgtgcattcaatgttttaaaagttgcaaaagttatactttcaat 24456377  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 44328520 - 44328560
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||| ||| |||||||| ||||||||||||||||||    
T  44328520 ttgtgcattcaatgtcttaaaaattgcaaaagttatacttt 44328560  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 11364874 - 11364821
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaatttatttttt 208  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||| || |||||    
T  11364874 ttgtgcattcaatatcttaaaagttccaaaagttatactttcaatataattttt 11364821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 227
Target Start/End: Complemental strand, 11380259 - 11380183
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat----ttattttttaatttccattttaagctcc 227  Q
    ||||||||| ||||||||||| ||| |||||||||||||||||||    || |||||||||||| ||||||| ||||    
T  11380259 ttgtgcattcaatatcttaaatgtttcaaaagttatactttcaatataatttttttttaatttcaattttaaactcc 11380183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 4228890 - 4228846
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||| ||||||||||||||  |||||||||||||||||||    
T  4228890 ttgtgcattcaatatcttaaaagtaacaaaagttatactttcaat 4228846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 54261888 - 54261848
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||| ||||||||||||||||||||||||| |||||    
T  54261888 ttgtgcattcaatatcttaaaagttgcaaaagttagacttt 54261848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 195
Target Start/End: Original strand, 37797817 - 37797854
Alignment:
Q  158 tgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  37797817 tgcatttaatctcttaaaagttgcaaaagttacacttt 37797854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 50170632 - 50170582
Alignment:
Q  85 ggaaatgttaacttgtttgggcccttggggcataagttaaaaaactaaatgtaga 139  Q
    ||||||||||||||||    |||||||||||||||||||| |||| |||||||||    
T  50170632 ggaaatgttaacttgt----gcccttggggcataagttaagaaaccaaatgtaga 50170582  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 6271369 - 6271325
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||    
T  6271369 ttgtgcattcaatagcttaaaagttgcaaaagttatactttcaat 6271325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 43131991 - 43131950
Alignment:
Q  158 tgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    |||||| |||||||||||| ||||||||||||||||||||||    
T  43131991 tgcattcaatatcttaaaaattgcaaaagttatactttcaat 43131950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 10227840 - 10227786
Alignment:
Q  171 ttaaaagttgcaaaagttatactttcaat-tta--ttttttaatttccattttaa 222  Q
    ||||||||||||||||||||| ||||||| |||  ||||||||||||||||||||    
T  10227840 ttaaaagttgcaaaagttataatttcaatattattttttttaatttccattttaa 10227786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 42239342 - 42239301
Alignment:
Q  154 tttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    |||||||||||||| |||||||| |||||||||||| |||||    
T  42239342 tttgtgcatttaatctcttaaaaattgcaaaagttacacttt 42239301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 39187522 - 39187566
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||    
T  39187522 ttgtgcattcaatatcttaaaagttgcaaaagttatattttcaat 39187566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 15080158 - 15080196
Alignment:
Q  161 atttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  15080158 atttaatgtcttaaaagttgcaaaagttatactttcaat 15080196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 4860559 - 4860515
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||| ||| ||||||||||||||||| |||||||||||||    
T  4860559 ttgtgcattcaatgtcttaaaagttgcaaaaattatactttcaat 4860515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 24256030 - 24256070
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  24256030 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 24256070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 266
Target Start/End: Original strand, 37625000 - 37625127
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat------ttattttttaatttccattttaagctcc---------acccttagggca 239  Q
    ||||||||| |||||||||||||||  |||||||||| |||||||      ||  ||||||||||||||||||||||||         ||||||||| ||    
T  37625000 ttgtgcattcaatatcttaaaagttttaaaagttatattttcaatataaaatttatttttaatttccattttaagctccttattttgtacccttaggaca 37625099  T
Q  240 caagttaacatga-ccatatttaaatag 266  Q
    ||||||||||||| || |||||||||||    
T  37625100 caagttaacatgacccttatttaaatag 37625127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 21417617 - 21417577
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| |||||||||||||||| |||| |||||    
T  21417617 ttgtgcatttaatctcttaaaagttgcaaaggttacacttt 21417577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 21418300 - 21418260
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| |||||||||||||||| |||| |||||    
T  21418300 ttgtgcatttaatctcttaaaagttgcaaaggttacacttt 21418260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 26913475 - 26913515
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| | ||||||||||||||||||| |||||    
T  26913475 ttgtgcatttaatcttttaaaagttgcaaaagttacacttt 26913515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 34070815 - 34070859
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||| ||| | ||||||||||||||||| |||||||||||    
T  34070815 ttgtgcattcaatgttttaaaagttgcaaaagtaatactttcaat 34070859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 43458000 - 43457956
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||    
T  43458000 ttgtgcattcaatgtcttaaaagttgcaaaagttatactttcaat 43457956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 16650631 - 16650671
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  16650631 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 16650671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 37209858 - 37209902
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    ||||||||||||||||||||||||| ||||||||||  |||||||    
T  37209858 ttgtgcatttaatatcttaaaagtttcaaaagttatcttttcaat 37209902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 195
Target Start/End: Complemental strand, 49497132 - 49497098
Alignment:
Q  161 atttaatatcttaaaagttgcaaaagttatacttt 195  Q
    |||||||||||||| ||||||||||||||||||||    
T  49497132 atttaatatcttaagagttgcaaaagttatacttt 49497098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 42489284 - 42489244
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||| | | |||||||||||||||||||||||||||    
T  42489284 ttgtgcattcattgtcttaaaagttgcaaaagttatacttt 42489244  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 52507590 - 52507550
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| | ||||||||||||||||||| |||||    
T  52507590 ttgtgcatttaatcttttaaaagttgcaaaagttacacttt 52507550  T

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Target: scaffold1173 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 208
Target Start/End: Complemental strand, 196 - 143
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatactttcaatttatttttt 208  Q
    ||||||||| ||||||||||||||| ||||||||||||||| ||| || |||||    
T  196 ttgtgcattcaatatcttaaaagtttcaaaagttatacttttaatataattttt 143  T

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Target: scaffold0118 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 19629 - 19669
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  19629 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 19669  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 4213305 - 4213345
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  4213305 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 4213345  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 15528502 - 15528449
Alignment:
Q  82 ataggaaatgttaacttgtttgggcccttggggcataagttaaaaaactaaatgtaga 139  Q
    ||||||||||||||||||| |     ||||||||||||||||||||||||||||||||    
T  15528502 ataggaaatgttaacttgtgtt----cttggggcataagttaaaaaactaaatgtaga 15528449  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 24202098 - 24202058
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  24202098 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 24202058  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 11753052 - 11753011
Alignment:
Q  154 tttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    |||||||||| ||| ||||||| |||||||||||||||||||    
T  11753052 tttgtgcattcaatgtcttaaatgttgcaaaagttatacttt 11753011  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 15528343 - 15528314
Alignment:
Q  229 cccttagggcacaagttaacatgaccatat 258  Q
    ||||||||||||||||||||||||||||||    
T  15528343 cccttagggcacaagttaacatgaccatat 15528314  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 29384016 - 29383975
Alignment:
Q  158 tgcatttaatatcttaaaagttgcaaaagttatactttcaat 199  Q
    |||||| ||| |||||||||||| ||||||||||||||||||    
T  29384016 tgcattcaatgtcttaaaagttggaaaagttatactttcaat 29383975  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 2444112 - 2444076
Alignment:
Q  159 gcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  2444112 gcatttaatgtcttaaaaattgcaaaagttatacttt 2444076  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 198
Target Start/End: Complemental strand, 15528433 - 15528389
Alignment:
Q  154 tttgtgcatttaatatcttaaaagttgcaaaagttatactttcaa 198  Q
    |||||| ||||||| |||||||||||| |||||||||| ||||||    
T  15528433 tttgtgaatttaatgtcttaaaagttgtaaaagttatattttcaa 15528389  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Complemental strand, 10031453 - 10031413
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  10031453 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 10031413  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 30341923 - 30341963
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  30341923 ttgtgcatttaatctcttaaaagttgcaaaagttacacttt 30341963  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 195
Target Start/End: Complemental strand, 3700355 - 3700316
Alignment:
Q  156 tgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  3700355 tgtgcatttaatctcttaaaagttgcaaaagttacacttt 3700316  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 3868795 - 3868834
Alignment:
Q  156 tgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  3868795 tgtgcatttaatctcttaaaagttgcaaaagttacacttt 3868834  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 195
Target Start/End: Original strand, 1866939 - 1866980
Alignment:
Q  154 tttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    |||||||||| |||||||||||||| |||||| |||||||||    
T  1866939 tttgtgcattcaatatcttaaaagtggcaaaaattatacttt 1866980  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 38869983 - 38869947
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttata 191  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  38869983 ttgtgcattcaatatcttaaaaattgcaaaagttata 38869947  T

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Target: scaffold0770 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 5158 - 5198
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| ||||||||||| ||||||||| |||||    
T  5158 ttgtgcatttaatctcttaaaagttacaaaagttacacttt 5198  T

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Target: scaffold0029 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 195
Target Start/End: Original strand, 103456 - 103496
Alignment:
Q  155 ttgtgcatttaatatcttaaaagttgcaaaagttatacttt 195  Q
    ||||||||||||| ||||||||||| ||||||||| |||||    
T  103456 ttgtgcatttaatctcttaaaagttacaaaagttacacttt 103496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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