View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8474_low_1 (Length: 804)

Name: NF8474_low_1
Description: NF8474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8474_low_1
NF8474_low_1
[»] chr8 (9 HSPs)
chr8 (149-637)||(25938692-25939181)
chr8 (395-646)||(40796449-40796700)
chr8 (488-638)||(7176113-7176263)
chr8 (494-641)||(45381822-45381972)
chr8 (377-641)||(44587536-44587801)
chr8 (443-546)||(30273693-30273796)
chr8 (494-543)||(41344221-41344270)
chr8 (181-238)||(45382231-45382288)
chr8 (183-235)||(44587341-44587393)
[»] chr1 (7 HSPs)
chr1 (183-641)||(30091886-30092346)
chr1 (233-641)||(12928386-12928795)
chr1 (282-647)||(3158328-3158693)
chr1 (491-641)||(19477368-19477518)
chr1 (491-641)||(3215058-3215208)
chr1 (494-543)||(45638060-45638109)
chr1 (337-627)||(46149237-46149532)
[»] chr7 (3 HSPs)
chr7 (215-641)||(28841445-28841872)
chr7 (491-637)||(27804623-27804769)
chr7 (488-561)||(2274832-2274905)
[»] chr6 (8 HSPs)
chr6 (371-641)||(1512168-1512437)
chr6 (488-637)||(5477270-5477407)
chr6 (490-641)||(12200313-12200464)
chr6 (552-646)||(13243976-13244070)
chr6 (567-641)||(7424983-7425057)
chr6 (567-641)||(7417861-7417935)
chr6 (583-641)||(32542716-32542774)
chr6 (174-235)||(1511970-1512031)
[»] chr4 (3 HSPs)
chr4 (201-646)||(11115876-11116322)
chr4 (503-580)||(50858462-50858539)
chr4 (493-580)||(26622662-26622749)
[»] chr3 (11 HSPs)
chr3 (371-646)||(19792162-19792439)
chr3 (371-641)||(1538889-1539159)
chr3 (395-641)||(54332435-54332680)
chr3 (377-625)||(22522511-22522759)
chr3 (488-646)||(25421997-25422155)
chr3 (354-446)||(42443733-42443823)
chr3 (492-560)||(6032806-6032874)
chr3 (666-705)||(24851423-24851462)
chr3 (726-797)||(24851453-24851527)
chr3 (595-641)||(27393140-27393186)
chr3 (495-580)||(3502162-3502247)
[»] scaffold0169 (1 HSPs)
scaffold0169 (371-636)||(22666-22927)
[»] chr5 (4 HSPs)
chr5 (438-641)||(14489243-14489446)
chr5 (440-546)||(38356615-38356721)
chr5 (494-543)||(8274683-8274732)
chr5 (491-579)||(27039765-27039851)
[»] chr2 (6 HSPs)
chr2 (439-621)||(13221781-13221963)
chr2 (491-641)||(14150241-14150391)
chr2 (371-560)||(40492321-40492510)
chr2 (563-637)||(27950967-27951041)
chr2 (488-577)||(32835918-32836007)
chr2 (488-646)||(11523998-11524157)
[»] scaffold0036 (2 HSPs)
scaffold0036 (563-637)||(44357-44431)
scaffold0036 (563-630)||(53755-53822)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-138; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 149 - 637
Target Start/End: Original strand, 25938692 - 25939181
Alignment:
Q  149 ggttagatggcagaagccggaacatggaagattgaaatgtaacgttgatgcatcattttcggaagctttaaactgtgttggttttggtttttgtattcgg 248  Q
    ||||| ||||||||| || |  ||||| || || || |||||||| |||||||| || ||||| | ||||||| ||||||||||||||||||| |||||     
T  25938692 ggttaaatggcagaaaccagcgcatggtaggttaaagtgtaacgtcgatgcatcgttctcggatgatttaaaccgtgttggttttggtttttgcattcgt 25938791  T
Q  249 gatgaggctggaaattgtgtacaagctcaaacaatgtggtcaaatccggtttgcttaacagatgttagaaaagatttgggactctcacatgctatccgat 348  Q
    ||||||| |||||||| | ||| |||  |||| |||||||| ||||||||||||| || ||||||| || ||| | ||||||||||||||||||||| ||    
T  25938792 gatgagggtggaaattttatacgagcaaaaacgatgtggtcgaatccggtttgctcaatagatgttggagaagctatgggactctcacatgctatccaat 25938891  T
Q  349 gggtacatgctctacaactaacaa-tgtggattttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatataactgagtttgg 447  Q
    |||||||||  |||| |||||||| ||||||||||||||||||||| ||||||||||| ||  ||||  ||| ||| |  ||||||||||| ||||||||    
T  25938892 gggtacatgaactactactaacaaatgtggattttgaattggatgccaagaaagttgtagattattttaatagaggaaacaatgatataaccgagtttgg 25938991  T
Q  448 agcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactcta 547  Q
    |||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  25938992 agcaatagtggaggagtgtagaagaagttgtaatctttactttgaaaactctaaggtagagtttagtcggagacaagcgaatgaggtcgctcacacttta 25939091  T
Q  548 actcgagaggccacgttcttagctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataa 637  Q
     ||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||    
T  25939092 gctcgagaggccactttcttagctaatccccatatctttaatgttgcacctctttgtatttcgactttgagtattaatgaaaaactataa 25939181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 395 - 646
Target Start/End: Original strand, 40796449 - 40796700
Alignment:
Q  395 aagaaagttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaa 494  Q
    ||||||||||||||  ||||| ||| ||| || ||||| ||  | |||||||||| ||| || || |||||||  ||||| |||| | |  | |||||||    
T  40796449 aagaaagttgtggattatttcaatagaggaagaaatgacatttccgagtttggagtaattgttgatgaatgtaagagaagatgtagtgtgtattttgaaa 40796548  T
Q  495 actctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccatacctttaatgttgc 594  Q
    ||| ||||||  |||||| ||||| |||||| |||| ||| ||||| || ||  || |||| ||||| || |||||||||||| ||  |||| ||| ||     
T  40796549 actttaaggtgaagtttaatcggaaacaagcaaatgtggttgctcatacacttgctagagatgccactttattagctagtccctatctctttgatgatgt 40796648  T
Q  595 acctctttgtattgcgactttgattattaatgaaaagctataagctaattcc 646  Q
    ||||||||||||| ||| ||||||  ||||||||||||||||||||| ||||    
T  40796649 acctctttgtatttcgattttgatatttaatgaaaagctataagctatttcc 40796700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 488 - 638
Target Start/End: Original strand, 7176113 - 7176263
Alignment:
Q  488 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccataccttta 587  Q
    |||||||| |||||||| ||||||  | |||||||||||||||| |||||||| | | || |||||||||| || ||||||||||||||||||   ||||    
T  7176113 tttgaaaattctaaggttgagttttgtaggagacaagcgaatgaagtcgctcataatttagctcgagaggctacattcttagctagtccccatgatttta 7176212  T
Q  588 atgttgcacctctttgtattgcgactttgattattaatgaaaagctataag 638  Q
    ||| || ||||  |||||||  |  ||||||   |||||||||||||||||    
T  7176213 atggtgtaccttcttgtatttggcatttgatatctaatgaaaagctataag 7176263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 494 - 641
Target Start/End: Complemental strand, 45381972 - 45381822
Alignment:
Q  494 aactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccac---gttcttagctagtccccatacctttaatg 590  Q
    |||||| |||| ||||||| |||||| |||||||||||||| |||||||| ||  | | |||||||||    ||||||||||||||||||   |||||||    
T  45381972 aactcttaggttgagtttagtcggagccaagcgaatgaggttgctcacacccttgcacaagaggccactttcttcttagctagtccccatgtttttaatg 45381873  T
Q  591 ttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
    |||  |||  ||||||| | || ||||||  ||||||||||||||||||||    
T  45381872 ttgttccttcttgtatttcaacattgatttctaatgaaaagctataagcta 45381822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 377 - 641
Target Start/End: Original strand, 44587536 - 44587801
Alignment:
Q  377 gattttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-aagaagt 475  Q
    ||||||||  |||| || ||||||||||||||  ||||| |||| || || ||||||||| | |||||||||||  || |||| |||||||| ||||| |    
T  44587536 gattttgagatggacgccaagaaagttgtggattatttcaataagggcaggaatgatatatccgagtttggagccgtaatggacgaatgtaggaagaa-t 44587634  T
Q  476 tgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtc 575  Q
    |  | |  | | ||||||||||||||||| ||||||| |||||||||| |||||| ||| |||||  ||||  ||| ||| ||||| | | |||||||||    
T  44587635 tccattgattattttgaaaactctaaggtggagtttagtcggagacaatcgaatgtggttgctcatgctcttgctcaagaagccacttccctagctagtc 44587734  T
Q  576 cccat-acctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
     ||||    ||| ||| || | || |||||||  |||||| |||| |||||||||||||||||||||    
T  44587735 accatgtttttttatgatgtatctttttgtatctcgacttcgatttttaatgaaaagctataagcta 44587801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 443 - 546
Target Start/End: Complemental strand, 30273796 - 30273693
Alignment:
Q  443 tttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcaca 542  Q
    |||||||||||| |||| ||||||| |||| || |||||  | | ||  ||||| ||||||| ||||||| |||||||||||||||||| |||||||| |    
T  30273796 tttggagcaatattggatgaatgtaaaagatgtcgtaatggttatttcaaaaacactaaggtggagtttagtcggagacaagcgaatgaagtcgctcata 30273697  T
Q  543 ctct 546  Q
    ||||    
T  30273696 ctct 30273693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 41344221 - 41344270
Alignment:
Q  494 aactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacac 543  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  41344221 aactctaaggtagagtttaaccggagacaagcgaatgaggtagctcacac 41344270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 45382288 - 45382231
Alignment:
Q  181 tgaaatgtaacgttgatgcatcattttcggaagctttaaactgtgttggttttggttt 238  Q
    |||| ||||| || || |||||||||||||| ||||||||||||||||| ||||||||    
T  45382288 tgaagtgtaatgtagacgcatcattttcggaggctttaaactgtgttgggtttggttt 45382231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 44587341 - 44587393
Alignment:
Q  183 aaatgtaacgttgatgcatcattttcggaagctttaaactgtgttggttttgg 235  Q
    ||||| |||||||| || |||||||||||||| || |||||||||||||||||    
T  44587341 aaatgcaacgttgacgcgtcattttcggaagcattgaactgtgttggttttgg 44587393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 183 - 641
Target Start/End: Complemental strand, 30092346 - 30091886
Alignment:
Q  183 aaatgtaacgttgatgcatcattttcggaagctttaaactgtgttggttttggtttttgtattcgggatgaggctggaaattgtgtacaagctcaaacaa 282  Q
    ||||| |||||||| || |  |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| | | ||  |||  ||||||    
T  30092346 aaatgcaacgttgacgcgttgttttcggatgctttaaactgtgttggttttggtttttgcattcgggatgaggctggaaactttataagagcaaaaacaa 30092247  T
Q  283 tgtggtcaaatccggtttgcttaacagatgttagaaaagatttgggactctcacatgctatccgatgggtacatgctctacaactaacaa-tgtggattt 381  Q
    ||||||| ||||||||||| | |||||||||  || ||| | |||||||||||||||||||||||||||| ||||  |||||||| |||| |||||||||    
T  30092246 tgtggtcgaatccggtttgttcaacagatgtcggagaagctctgggactctcacatgctatccgatgggtgcatgaactacaacttacaaatgtggattt 30092147  T
Q  382 tgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaa-tgtagaagaagttgtaa 480  Q
    ||| || ||||| || || ||||| ||  | ||| ||| ||| ||||||||||| |||||||||||||||||||||| || | ||| | ||||||||| |    
T  30092146 tgagttcgatgcaaaaaaggttgtagattacttcaatagaggtagtaatgatattactgagtttggagcaatagtgggaggagtgtcggagaagttgtga 30092047  T
Q  481 tcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccat 580  Q
    |||  | ||||||||| ||||||||||||||| |||||||||| |||| |||||||||||||||||| ||||||||| ||| |||||| |||||| ||||    
T  30092046 tctctattttgaaaacactaaggtagagtttagtcggagacaatcgaaggaggtcgctcacactctagctcgagaggacactttcttaactagtctccat 30091947  T
Q  581 acctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
    | ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  30091946 atctttaatgttgcaccactttgtatttcgactttgattattaatgaaaagctataagcta 30091886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 233 - 641
Target Start/End: Original strand, 12928386 - 12928795
Alignment:
Q  233 tggtttttgtattcgggatgaggctggaaattgtgtacaagctcaaacaatgtggtcaaatccggtttgcttaacagatgttagaaaagatttgggactc 332  Q
    ||||||||| | ||| ||||||| |||||||| | ||| |||  |||| |||||||| |||||||||| || || ||||||| || ||| | ||||| ||    
T  12928386 tggtttttgcaatcgtgatgagggtggaaattttatacgagcaaaaacgatgtggtcgaatccggttttctcaatagatgttggagaagctatgggattc 12928485  T
Q  333 tcacatgctatccgatgggtacatgctctacaactaacaa-tgtggattttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatg 431  Q
    ||||||||||||| |||| ||||||  ||||||||||||| ||||||||||||||||||||| ||||||||||||||  ||||  ||| ||| |  ||||    
T  12928486 tcacatgctatccaatggatacatgaactacaactaacaaatgtggattttgaattggatgccaagaaagttgtggattattttaatagaggaaacaatg 12928585  T
Q  432 atataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatga 531  Q
    ||||||| || ||||||||||||||| | || ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |    
T  12928586 atataaccgaatttggagcaatagtgaaggagtgtagaagaagttgtaatctttactttgaaaactctaaggtagagtttagtcggaaacaagcgaataa 12928685  T
Q  532 ggtcgctcacactctaactcgagaggccacgttcttagctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaag 631  Q
    ||| ||||||||| || |||||||| |||| |||||| || ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12928686 ggttgctcacactttatctcgagagaccactttcttaacttgtccccatatctttaatgttgcacctctttgtatttcgactttgattattaatgaaaag 12928785  T
Q  632 ctataagcta 641  Q
    ||||||||||    
T  12928786 ctataagcta 12928795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 282 - 647
Target Start/End: Complemental strand, 3158693 - 3158328
Alignment:
Q  282 atgtggtcaaatccggtttgcttaacagatgttagaaaagatttgggactctcacatgctatccgatgggtacatgctctacaactaacaa-tgtggatt 380  Q
    |||||||| ||||  ||||| | | ||| |||| || ||| |||| ||||||||||||||||| ||||||  ||||  |||||||| |||| |||| |||    
T  3158693 atgtggtcgaatctagtttgttcatcagctgttggagaagctttgagactctcacatgctatctgatgggagcatgaactacaacttacaaatgtgaatt 3158594  T
Q  381 ttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaa 480  Q
    || | |||||||| ||||| || || ||  ||||  ||| | |  ||||||||||| |||||||||||||||||||||| || |||   |||||||||||    
T  3158593 ttaagttggatgcgaagaaggt-gtagattattttaatagaagtggtaatgatatatctgagtttggagcaatagtggaggagtgtcagagaagttgtaa 3158495  T
Q  481 tcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccat 580  Q
    |||| | ||||||||||||||||||||||||| |||||||||||||| ||| ||| |||| |||||  ||||||||||||| ||||||| |||||  |||    
T  3158494 tctttattttgaaaactctaaggtagagtttagtcggagacaagcgagtgaagtcactcatactcttgctcgagaggccactttcttagttagtcttcat 3158395  T
Q  581 acctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataagctaattccc 647  Q
    | |||||||  |||||||||||||||| |||||||||||||| ||||| ||||||||| || |||||    
T  3158394 atctttaatactgcacctctttgtatttcgactttgattattgatgaacagctataagatatttccc 3158328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 491 - 641
Target Start/End: Original strand, 19477368 - 19477518
Alignment:
Q  491 gaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccatacctttaatg 590  Q
    |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||  | ||||||||||| |||||||||||||||||||| |||||||    
T  19477368 gaaaactccatggtagagtttagtcggagacaagcgaatgaggtcgctcacactcttgcacgagaggccactttcttagctagtccccatacttttaatg 19477467  T
Q  591 ttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
     || ||||| ||||||| |||| |||||| ||||| |||||||||||||||    
T  19477468 atgtacctcattgtattacgacgttgatttttaatcaaaagctataagcta 19477518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 491 - 641
Target Start/End: Original strand, 3215058 - 3215208
Alignment:
Q  491 gaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccatacctttaatg 590  Q
    |||||||||||||| ||||| | | ||||||||||||||||||||||||| |||||  ||  ||||||||  || | || | ||||||||  ||||||||    
T  3215058 gaaaactctaaggtggagttcagtaggagacaagcgaatgaggtcgctcatactcttgctacagaggccatattttcagttggtccccatgtctttaatg 3215157  T
Q  591 ttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
     || |||||| ||||||  ||||||||||| ||||||||||||||||||||    
T  3215158 atgtacctctatgtattttgactttgattaataatgaaaagctataagcta 3215208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 45638060 - 45638109
Alignment:
Q  494 aactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacac 543  Q
    ||||| ||||| ||||||| ||||||||||||||||||||| ||||||||    
T  45638060 aactcaaaggttgagtttaatcggagacaagcgaatgaggtagctcacac 45638109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 337 - 627
Target Start/End: Complemental strand, 46149532 - 46149237
Alignment:
Q  337 atgctatccgatgggtacatgctctacaactaacaa-tgtggattttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatat 435  Q
    ||||||||  |||||| ||||  |||||||| |||| | || |||||||||| ||||  ||||| ||||| ||  ||||| ||||||| || ||||||||    
T  46149532 atgctatctaatgggtgcatgaactacaacttacaaatatgaattttgaatttgatgtaaagaatgttgtagattatttcaataaaggtagcaatgatat 46149433  T
Q  436 aactgagtttggagcaatagtggaagaatgtagaagaagttgtaat--ct-tcactttgaaaactctaaggtagagtttactcggagacaagcgaatgag 532  Q
      || | | |||||||||  | ||  ||||||| ||||||||||||  || ||| ||||||||||||||||| ||||||| | | | ||||| ||||| |    
T  46149432 ctctaaatatggagcaattatagataaatgtaggagaagttgtaataactctcattttgaaaactctaaggtggagtttagttgaaaacaagggaatgtg 46149333  T
Q  533 gtcgctcacactctaactcgagaggccacgttcttagctagtccccat-acctttaatgttgcacctctttgtattgcgactttgattattaatga 627  Q
    |||| ||| |||||  ||||||| | ||| || ||| ||| ||||| |    ||||||| || ||||||||||||  |||| |||||| |||||||    
T  46149332 gtcgttcagactcttgctcgagatgtcacttttttaactaatccccgtgtgttttaatgatgtacctctttgtatctcgacattgatttttaatga 46149237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 132; Significance: 4e-68; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 215 - 641
Target Start/End: Complemental strand, 28841872 - 28841445
Alignment:
Q  215 tttaaactgtgttggttttggtttttgtattcgggatgaggctggaaattgtgtacaagctcaaacaatgtggtcaaatccggtttgcttaacagatgtt 314  Q
    |||||| |||||||||||||||||||| |||||||||||||||| ||| | | ||  | |  |||||||||| |  ||||||||||||| ||||||||||    
T  28841872 tttaaattgtgttggttttggtttttgcattcgggatgaggctgtaaactttataagaacaaaaacaatgtgattgaatccggtttgctcaacagatgtt 28841773  T
Q  315 agaaaagatttgggactctcacatgctatccgatgggtacatgctctacaactaacaa-tgtggattttgaattggatgctaagaaagttgtggaccatt 413  Q
     || ||| | | ||||||||||||| |||||||||||| | ||  |||||||| |||| |||||||||||| |||||||| || || |||||  |  | |    
T  28841772 ggagaagctctaggactctcacatgttatccgatgggtgcttgaactacaacttacaaatgtggattttgagttggatgcaaaaaaggttgtatattact 28841673  T
Q  414 tccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttac 513  Q
    || ||| ||| |  ||||||||| |||| ||||||||||||||||| || |||   ||||||||| | ||| | ||| |||||||||||||||||||||     
T  28841672 tcaatagaggtataaatgatatacctgaatttggagcaatagtggaggagtgtcatagaagttgtgaactttaatttaaaaactctaaggtagagtttag 28841573  T
Q  514 tcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccatacctttaatgttgcacctctttgtattgcgact 613  Q
    |||||| ||||| |||||||| ||| || |||||  |||||||| |||  |||||| | ||| ||||| |||||||| ||||||||||| ||||  ||||    
T  28841572 tcggagtcaagcaaatgaggttgcttactctctagttcgagaggtcactgtcttagttggtctccatatctttaatgatgcacctctttatattttgact 28841473  T
Q  614 ttgattattaatgaaaagctataagcta 641  Q
    ||||||||||||||||| ||||||||||    
T  28841472 ttgattattaatgaaaaactataagcta 28841445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 491 - 637
Target Start/End: Complemental strand, 27804769 - 27804623
Alignment:
Q  491 gaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccatacctttaatg 590  Q
    |||||||||||||| ||||| | ||||| ||||||||||||||||||||| |||||  || |||||||||  |||| |||| ||||||||  ||||||||    
T  27804769 gaaaactctaaggtggagttcagtcggaaacaagcgaatgaggtcgctcatactcttgctagagaggccatattctcagctggtccccatgtctttaatg 27804670  T
Q  591 ttgcacctctttgtattgcgactttgattattaatgaaaagctataa 637  Q
     || |||||| ||||||  ||||||||||| ||||||||||||||||    
T  27804669 atgtacctctatgtattttgactttgattaataatgaaaagctataa 27804623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 561
Target Start/End: Complemental strand, 2274905 - 2274832
Alignment:
Q  488 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccac 561  Q
    |||||||||| ||||||  |||||| ||||||||||||||||| ||||||||| | |||  |||||||| ||||    
T  2274905 tttgaaaactttaaggtgaagtttagtcggagacaagcgaatgtggtcgctcatattcttgctcgagagcccac 2274832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 2e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 371 - 641
Target Start/End: Original strand, 1512168 - 1512437
Alignment:
Q  371 aatgtggattttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-a 469  Q
    ||||| |||||||| |||||||| ||||||||||||||  ||||| |||| ||  | ||||||||| | ||||||||||| ||| |||| |||||||| |    
T  1512168 aatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatccgagtttggagctataatggatgaatgtagga 1512267  T
Q  470 agaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttag 569  Q
    |||| ||| |||  |   |||||||| |||||||| ||||||| ||||||||||||||||| ||||||||| |||||  ||||||||| ||  | | |||    
T  1512268 agaa-ttgcaatgattgttttgaaaattctaaggtggagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaggtcatttccctag 1512366  T
Q  570 ctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
    ||||||||||||  ||| ||| || ||||||||||||  |||| |||||| |||||||||||||||||||||    
T  1512367 ctagtccccatatttttgatgatgtacctctttgtatctcgac-ttgatttttaatgaaaagctataagcta 1512437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 488 - 637
Target Start/End: Complemental strand, 5477407 - 5477270
Alignment:
Q  488 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccataccttta 587  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| |||| |||             |||  ||||||||| ||||||||  |||||    
T  5477407 tttgaaaactctaaggtggagtttagtcggagacaagcgaatgaggtcactcatacta------------ccatattcttagctggtccccatgtcttta 5477320  T
Q  588 atgttgcacctctttgtattgcgactttgattattaatgaaaagctataa 637  Q
    ||| |||||||||||||||   ||||||||||| ||||||||||||||||    
T  5477319 atgatgcacctctttgtatcttgactttgattaataatgaaaagctataa 5477270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 490 - 641
Target Start/End: Complemental strand, 12200464 - 12200313
Alignment:
Q  490 tgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccatacctttaat 589  Q
    |||||||| |||| | ||||||| | ||||||||||||||||||||||||| |||||  || |||||||    |||||| ||||| ||||    ||||||    
T  12200464 tgaaaactttaagatggagtttagttggagacaagcgaatgaggtcgctcatactcttgctagagaggctttattcttacctagttcccaagtttttaat 12200365  T
Q  590 gttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
    | || ||||||| |||||  ||| ||||||| ||||||||||||||||||||    
T  12200364 gatgtacctcttagtattttgacattgattaataatgaaaagctataagcta 12200313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 552 - 646
Target Start/End: Original strand, 13243976 - 13244070
Alignment:
Q  552 gagaggccacgttcttagctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataagctaattcc 646  Q
    |||||||||| || |||||||||||||||  |||| ||| || ||||||||||||| ||| ||||||   |||||||||||||||||||| ||||    
T  13243976 gagaggccactttattagctagtccccatctctttgatgatgtacctctttgtatttcgattttgatatctaatgaaaagctataagctatttcc 13244070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 7425057 - 7424983
Alignment:
Q  567 tagctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
    |||||||| |||||| ||||||||||  || |||||||||| ||||  |||||| |||||| |||||||||||||    
T  7425057 tagctagttcccatatctttaatgttatacatctttgtatttcgacaatgattaataatgacaagctataagcta 7424983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 567 - 641
Target Start/End: Complemental strand, 7417935 - 7417861
Alignment:
Q  567 tagctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
    ||||||||||||||| ||||||| ||  || |||||||||| ||||  |||||| |||||| || ||||||||||    
T  7417935 tagctagtccccatatctttaatattatacatctttgtatttcgacaatgattaataatgacaaactataagcta 7417861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 583 - 641
Target Start/End: Complemental strand, 32542774 - 32542716
Alignment:
Q  583 ctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
    |||||||| |||||||| || ||||  ||| ||||||| ||||||||||||||||||||    
T  32542774 ctttaatgatgcacctccttatattttgacattgattaataatgaaaagctataagcta 32542716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 1511970 - 1512031
Alignment:
Q  174 ggaagattgaaatgtaacgttgatgcatcattttcggaagctttaaactgtgttggttttgg 235  Q
    ||||| || ||||| || || |||||||||||||||||||| || || ||||||||||||||    
T  1511970 ggaaggttaaaatgcaatgtcgatgcatcattttcggaagcattgaattgtgttggttttgg 1512031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 7e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 201 - 646
Target Start/End: Original strand, 11115876 - 11116322
Alignment:
Q  201 tcattttcggaagctttaaactgtgttggttttggtttttgtattcgggatgaggctggaaattgtgtacaagctcaaacaatgtggtcaaatccggttt 300  Q
    |||||||||||||| |||||||| || || ||||| |||||||||||| |||||  ||||||   | |  ||||  ||||||||||||| ||||| ||||    
T  11115876 tcattttcggaagccttaaactgcgtaggatttggattttgtattcggaatgagtttggaaaccttatcaaagcaaaaacaatgtggtccaatccagttt 11115975  T
Q  301 gcttaacagatgttagaaaagatttgggactctcacatgctatccgatgggtacatgctctacaactaacaa-tgtggattttgaattggatgctaagaa 399  Q
     |    |||||||| || ||| ||||||  | ||| | |||||||| ||||| ||||  ||||||||   || | |  ||||||| |||||||| || ||    
T  11115976 tcgcttcagatgttggagaagctttgggtttatcaaacgctatccgttgggtgcatgagctacaacttttaaatattaattttgagttggatgcaaaaaa 11116075  T
Q  400 agttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactct 499  Q
     ||||| ||  ||||  |||| || |||||||||||  | ||||||||  |||||||||| || ||  | |||||   |||| |  | |||| |||||||    
T  11116076 ggttgtagattattttaataacggtagtaatgatatttccgagtttggctcaatagtggaggagtgccggagaagccataatttctattttgcaaactct 11116175  T
Q  500 aaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccatacctttaatgttgcacctc 599  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||  | | ||||||||||| |||||||||||||||||  ||||||| ||  |||     
T  11116176 aaggtagagtttagtcggagacaagcgaacgaggtcgctcacactcttgcacaagaggccacgtccttagctagtccccataattttaatgatgtgcctt 11116275  T
Q  600 tttgtattgcgactttgattattaatgaaaagctataagctaattcc 646  Q
    |||||||| | | ||||||  ||||||||||||||||||||| ||||    
T  11116276 tttgtatttcaaatttgatatttaatgaaaagctataagctatttcc 11116322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 503 - 580
Target Start/End: Original strand, 50858462 - 50858539
Alignment:
Q  503 gtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccat 580  Q
    |||||||||| ||||||||||||||| ||||||||||| |||||  |||||||||||  || ||||||||||||||||    
T  50858462 gtagagtttagtcggagacaagcgaacgaggtcgctcatactcttgctcgagaggccttgtccttagctagtccccat 50858539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 493 - 580
Target Start/End: Original strand, 26622662 - 26622749
Alignment:
Q  493 aaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccat 580  Q
    |||||||||||||||||||  | |||||||||||||||| |||||| | | | || |||||||||| || ||||||||||||||||||    
T  26622662 aaactctaaggtagagttttgtaggagacaagcgaatgaagtcgcttataatttagctcgagaggctacattcttagctagtccccat 26622749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 4e-34; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 371 - 646
Target Start/End: Original strand, 19792162 - 19792439
Alignment:
Q  371 aatgtggattttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaa 470  Q
    ||||| ||||| || |||||||| ||||||||||||||  ||||  ||| ||| || ||||| ||  | |||||||||||||| || || |||||||  |    
T  19792162 aatgttgatttcgagttggatgccaagaaagttgtggattattttaatagaggaagaaatgacatttccgagtttggagcaattgttgatgaatgtaaga 19792261  T
Q  471 gaagttgtaatcttc--actttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttctta 568  Q
    |||| |||| | |    | ||||||||||||||||| ||||||| |||||||||||| |||| ||| ||||| || ||  || |||||||||| || |||    
T  19792262 gaagatgtagtgtgtgtattttgaaaactctaaggtggagtttaatcggagacaagcaaatgtggttgctcatacacttgctagagaggccactttatta 19792361  T
Q  569 gctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataagctaattcc 646  Q
    ||||||||||||  |||| ||| || ||||||||||||| ||||||||||   |||||||||||||||||||| ||||    
T  19792362 gctagtccccatctctttgatgatgtacctctttgtatttcgactttgatatctaatgaaaagctataagctatttcc 19792439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 371 - 641
Target Start/End: Complemental strand, 1539159 - 1538889
Alignment:
Q  371 aatgtggattttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-a 469  Q
    ||||| |||||||| |||||||| ||||||||||||||  ||||| |||| ||  | ||||||||| | ||||||||||  ||| |||| |||||||| |    
T  1539159 aatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatccgagtttggagatataatggatgaatgtagga 1539060  T
Q  470 agaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttag 569  Q
    |||| ||| |||  |   ||||||||||||||||| ||||||| ||||||||||||||||  ||||||||| |||||  ||| ||||||||  | | ||     
T  1539059 agaa-ttgcaatgattgttttgaaaactctaaggtggagtttagtcggagacaagcgaatatggtcgctcatactcttgctccagaggccatttccctaa 1538961  T
Q  570 ctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
    ||||| |||||   ||| ||| || ||||||||||||  ||||||||||| ||||||||||| |||||||||    
T  1538960 ctagttcccatgtttttgatgatgtacctctttgtatctcgactttgatttttaatgaaaagttataagcta 1538889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 395 - 641
Target Start/End: Complemental strand, 54332680 - 54332435
Alignment:
Q  395 aagaaagttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-aagaagttgtaatc-ttcactttga 492  Q
    ||||||||||||||  ||||| |||| || | |||||||||| | ||||||||||| ||| ||||  ||||||| ||||| ||| |||  ||   ||| |    
T  54332680 aagaaagttgtggattatttcaataagggcaataatgatatatcagagtttggagccataatggataaatgtaggaagaa-ttgcaatgattttttttca 54332582  T
Q  493 aaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttct-tagctagtccccatacctttaatgt 591  Q
    |||||||||||| ||||||| |||||||||| |||||| ||||||||| |||||  ||||||||||||| |||| ||||||||||||||   ||| |||     
T  54332581 aaactctaaggtggagtttagtcggagacaaacgaatgtggtcgctcatactcttgctcgagaggccac-ttctctagctagtccccat-tttttgatga 54332484  T
Q  592 tgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
    || |||| ||| |||  |||||||||||||||||||||||||||||||||    
T  54332483 tgtacct-tttttatctcgactttgattattaatgaaaagctataagcta 54332435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 377 - 625
Target Start/End: Complemental strand, 22522759 - 22522511
Alignment:
Q  377 gattttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-aagaagt 475  Q
    |||||||| ||||| || |||||||||||| |  ||||| |||| || || ||||||||| | || |||||||| ||| |||| |||||||| ||||| |    
T  22522759 gattttgagttggacgccaagaaagttgtgtattatttcaataagggaaggaatgatatatccgaatttggagccataatggatgaatgtaggaagaa-t 22522661  T
Q  476 tgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttct-tagctagt 574  Q
    || |||  |   ||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |||||  ||||||| ||||| |||| ||||||||    
T  22522660 tgcaatgatttttttgaaaactctaaggtggagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaagccac-ttctctagctagt 22522562  T
Q  575 ccccatacctttaatgttgcacctctttgtattgcgactttgattattaat 625  Q
     ||| |   ||| ||  || |||| |||||||  |||||||||||||||||    
T  22522561 tcccgtgtttttgataatgtacctttttgtatctcgactttgattattaat 22522511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 488 - 646
Target Start/End: Complemental strand, 25422155 - 25421997
Alignment:
Q  488 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccataccttta 587  Q
    |||| |||||||||||||||||||  |  ||||||||||||||| |||||||| | | || | |||||||| || ||||||||||||||||||   ||||    
T  25422155 tttggaaactctaaggtagagttttgtaagagacaagcgaatgaagtcgctcataatttagcccgagaggctacattcttagctagtccccatgatttta 25422056  T
Q  588 atgttgcacctctttgtattgcgactttgattattaatgaaaagctataagctaattcc 646  Q
    ||| || ||||  |||||||  |  ||||||   |||||||||||||||||||| ||||    
T  25422055 atggtgtaccttcttgtatttggcatttgatatctaatgaaaagctataagctatttcc 25421997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 354 - 446
Target Start/End: Complemental strand, 42443823 - 42443733
Alignment:
Q  354 catgctctacaactaacaa-tgtggattttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatataactgagtttg 446  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||| |||||     ||||| |||||| |||||||||||||| ||||||||    
T  42443823 catgctctacaagtaacaaatgtggattttgaattggatgctaagaaggttgt---atatttcaataaagtgagtaatgatataattgagtttg 42443733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 492 - 560
Target Start/End: Complemental strand, 6032874 - 6032806
Alignment:
Q  492 aaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggcca 560  Q
    ||||||||||||| | ||||| ||||||||||||||||| ||||||||| |||||  ||||||||||||    
T  6032874 aaaactctaaggtggtgtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagaggcca 6032806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 666 - 705
Target Start/End: Original strand, 24851423 - 24851462
Alignment:
Q  666 atgtataattgaaggtccatgctaattattttgatgtacg 705  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  24851423 atgtataattgaaggtccatgctaattattttgatgtacg 24851462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 726 - 797
Target Start/End: Original strand, 24851453 - 24851527
Alignment:
Q  726 ttgatgtacactttttagagatatttgttacctatattgttga---attttactcaatttgatgtctctgcttct 797  Q
    |||||||||  |||||||||||||||| |||||||||||||||    |||||||||||||||||| |||| ||||    
T  24851453 ttgatgtacgttttttagagatatttgatacctatattgttgattttttttactcaatttgatgtttctgtttct 24851527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 595 - 641
Target Start/End: Complemental strand, 27393186 - 27393140
Alignment:
Q  595 acctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||||    
T  27393186 acctctttgtatctcgactttgatttttaatgaaaagctataagcta 27393140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 495 - 580
Target Start/End: Complemental strand, 3502247 - 3502162
Alignment:
Q  495 actctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccat 580  Q
    |||||||||| |||||||  | || |||||||||| | ||||||||||||||  | |||||| |||  |||||| |||||||||||    
T  3502247 actctaaggttgagtttatccagacacaagcgaatcaagtcgctcacactcttgcacgagagaccattttcttaactagtccccat 3502162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 371 - 636
Target Start/End: Complemental strand, 22927 - 22666
Alignment:
Q  371 aatgtggattttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtag-a 469  Q
    ||||| |||||||| |||||||| ||||||||||||||  ||||| |||| ||  | ||||||||| | ||||||||||| ||| |||| |||||||| |    
T  22927 aatgtagattttgagttggatgccaagaaagttgtggattatttcaataagggcgggaatgatatatccgagtttggagctataatggatgaatgtagga 22828  T
Q  470 agaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttag 569  Q
    |||| ||| |||  |   |||||||||||||||||  |||||| ||||||||||||||||| ||||||||| |||||  |||||||| |||  | | |||    
T  22827 agaa-ttgcaatgattgttttgaaaactctaaggtgaagtttagtcggagacaagcgaatgtggtcgctcatactcttgctcgagagaccatttccctag 22729  T
Q  570 ctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctata 636  Q
    ||||||||||||  ||| ||| || |||||| |||    ||||||||||| ||||||||||||||||    
T  22728 ctagtccccatatttttgatgatgtacctctatgt----cgactttgatttttaatgaaaagctata 22666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 438 - 641
Target Start/End: Complemental strand, 14489446 - 14489243
Alignment:
Q  438 ctgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgc 537  Q
    |||| |||||||||||| |||| ||||| | |||| |  | ||| || | || ||||||||||||||  |||||| ||||||||||||||||||||||||    
T  14489446 ctgaatttggagcaatattggaggaatgcaaaagatgccgcaatgtttatttcgaaaactctaaggtgaagtttagtcggagacaagcgaatgaggtcgc 14489347  T
Q  538 tcacactctaactcgagaggccacgttcttagctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataa 637  Q
    ||| |||||  || |||||||    |||||||||||||||||    ||||||| || |||||||||||||  ||| ||||||| ||||||||| ||||||    
T  14489346 tcatactcttgctagagaggctttattcttagctagtccccaagtttttaatgatgtacctctttgtattttgacattgattaataatgaaaaactataa 14489247  T
Q  638 gcta 641  Q
    ||||    
T  14489246 gcta 14489243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 440 - 546
Target Start/End: Original strand, 38356615 - 38356721
Alignment:
Q  440 gagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctc 539  Q
    |||||||||||||||||||| ||||||| |||| |||||||| || | || ||||| |||||||| || |||| ||||||||||| || ||| ||| |||    
T  38356615 gagtttggagcaatagtggacgaatgtaaaagatgttgtaatgtttatttcgaaaattctaaggtggaatttagtcggagacaagtgagtgaagtccctc 38356714  T
Q  540 acactct 546  Q
    | |||||    
T  38356715 atactct 38356721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 494 - 543
Target Start/End: Original strand, 8274683 - 8274732
Alignment:
Q  494 aactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacac 543  Q
    |||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  8274683 aactctaaggtagagtttaaccggagacaagcgaatgaggtagctcacac 8274732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 491 - 579
Target Start/End: Complemental strand, 27039851 - 27039765
Alignment:
Q  491 gaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtcccca 579  Q
    |||||||||||||| |||||||   |||||| |||||||||||||||||| |||||  || |||||||    |||||| ||||||||||    
T  27039851 gaaaactctaaggtggagtttaa--ggagacgagcgaatgaggtcgctcatactcttgctagagaggctttattcttatctagtcccca 27039765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 439 - 621
Target Start/End: Original strand, 13221781 - 13221963
Alignment:
Q  439 tgagtttggagcaatagtggaagaatgtagaagaagttgtaatcttcactttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgct 538  Q
    ||||||||||||||| ||||| |||||| | |||| ||||  |  | | ||||||||||||||||||||||||| || ||||||||| | |||||| |||    
T  13221781 tgagtttggagcaatcgtggaggaatgtcggagaaattgtgttacttattttgaaaactctaaggtagagtttagtcagagacaagcaactgaggttgct 13221880  T
Q  539 cacactctaactcgagaggccacgttcttagctagtccccatacctttaatgttgcacctctttgtattgcgactttgattat 621  Q
    || || ||  || || | | ||| |||||| |||||||||| |  |||||||||||||||||||||||| ||||||| |||||    
T  13221881 catacacttgctagaaatgtcactttcttaactagtccccaaatttttaatgttgcacctctttgtatttcgactttaattat 13221963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 491 - 641
Target Start/End: Complemental strand, 14150391 - 14150241
Alignment:
Q  491 gaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccatacctttaatg 590  Q
    |||||||||||||  ||||| | ||||||||||||||||||||||||||| |||||  ||  ||||||||  |||| |||| ||||||||   ||||||     
T  14150391 gaaaactctaaggatgagttcagtcggagacaagcgaatgaggtcgctcatactcttgctaaagaggccatattctcagctggtccccatgtatttaata 14150292  T
Q  591 ttgcacctctttgtattgcgactttgattattaatgaaaagctataagcta 641  Q
     || |||||| ||||||  ||||||||||| ||||||||||||||||||||    
T  14150291 atgtacctctatgtattttgactttgattaataatgaaaagctataagcta 14150241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 371 - 560
Target Start/End: Original strand, 40492321 - 40492510
Alignment:
Q  371 aatgtggattttgaattggatgctaagaaagttgtggaccatttccataaagggagtaatgatataactgagtttggagcaatagtggaagaatgtagaa 470  Q
    |||||||||||||| |||||||| ||||||||||| ||  ||||  | |||||   |||||| ||  ||||||||||||||||||| || |||||| | |    
T  40492321 aatgtggattttgagttggatgcaaagaaagttgtagattattttaacaaaggtcataatgacatttctgagtttggagcaatagttgaggaatgtcgga 40492420  T
Q  471 gaagttgtaatcttcactttgaaaactctaa-ggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggcca 560  Q
    ||| ||||   ||| | |||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||  |  ||||||||||||    
T  40492421 gaaattgtctactt-attttgtaaactctaaaggtagagtttagtcggagacaagcgaatgaggtcgctcacacatttgctcgagaggcca 40492510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 563 - 637
Target Start/End: Original strand, 27950967 - 27951041
Alignment:
Q  563 ttcttagctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataa 637  Q
    |||||| ||||||||| ||  |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||    
T  27950967 ttcttaactagtccccgtatttttaatgttgtacctctttgtatttcgactttgattattaatgaaaaactataa 27951041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 488 - 577
Target Start/End: Complemental strand, 32836007 - 32835918
Alignment:
Q  488 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccc 577  Q
    ||||||||||||||||| ||||||| |||||||||| |||||||||| ||||| | |||  | ||||||||||| ||| |||||||||||    
T  32836007 tttgaaaactctaaggttgagtttagtcggagacaaacgaatgaggtagctcataatcttgcacgagaggccactttcctagctagtccc 32835918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 646
Target Start/End: Complemental strand, 11524157 - 11523998
Alignment:
Q  488 tttgaaaactctaaggtagagtttactcggagacaagcgaatgaggtcgctcacactctaactcgagaggccacgttcttagctagtccccataccttta 587  Q
    ||||||||||||||| | ||||||| | ||||||||||||||   |||||||| ||| |  || |||||||||   || || ||||| |||| || ||||    
T  11524157 tttgaaaactctaagattgagtttaataggagacaagcgaatatagtcgctcatactattgctagagaggccatactcctaactagttcccaaactttta 11524058  T
Q  588 atgttgcacctctttgtattgcgactttgattat-taatgaaaagctataagctaattcc 646  Q
    |||||| ||||  ||||||||   |||| ||| | ||||||||| |||||||||| ||||    
T  11524057 atgttgtaccttcttgtattggatctttaattttataatgaaaaactataagctatttcc 11523998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 563 - 637
Target Start/End: Original strand, 44357 - 44431
Alignment:
Q  563 ttcttagctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaagctataa 637  Q
    |||||| ||||||||| ||  |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||    
T  44357 ttcttaactagtccccgtatttttaatgttgtacctctttgtatttcgactttgattattaatgaaaaactataa 44431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 563 - 630
Target Start/End: Original strand, 53755 - 53822
Alignment:
Q  563 ttcttagctagtccccatacctttaatgttgcacctctttgtattgcgactttgattattaatgaaaa 630  Q
    |||||||||||||||| ||  |||||||||| |||||||| |||| ||||||||||||||||||||||    
T  53755 ttcttagctagtccccgtatttttaatgttgtacctctttatatttcgactttgattattaatgaaaa 53822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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