View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8474_low_3 (Length: 450)
Name: NF8474_low_3
Description: NF8474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8474_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 24564251 - 24564668
Alignment:
| Q |
18 |
aaattacttcaacgtgactttgttacaacnnnnnnnntcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaactt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
24564251 |
aaattacttcaacgtgactttgttacaacaaaaaaa-tcaatgtgattaagacatgaaatgatcgttgcagtttagaaaggccatatggccccttaactt |
24564349 |
T |
|
| Q |
118 |
agctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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|
| T |
24564350 |
agctgactaatttaaatgtatatttgcgcagaccaagttactcaatgaatatggtttggaatgggtattaaatgtattggcatgtataaagcatcggaat |
24564449 |
T |
|
| Q |
218 |
atacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
24564450 |
atacacagagacactaacatctgaacaccgacaattattttaaaaaataatataattcaatgtaatcacatgtatctatattttgtaggcgacgaatacg |
24564549 |
T |
|
| Q |
318 |
gggacgtatcaaacaccaaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattcacttcaatt |
417 |
Q |
| |
|
|| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24564550 |
ggaacgtatcagacacc-aaacacgcctatgattataagcgtcgatgccacataaattagtattgcaattcaccaaatgaaaattacattcacttcaatt |
24564648 |
T |
|
| Q |
418 |
gatataaggaagtcccagta |
437 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
24564649 |
gatataaggaagtcccagta |
24564668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 65 - 432
Target Start/End: Original strand, 9800524 - 9800890
Alignment:
| Q |
65 |
taagacatgaaatgatcattgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagttactcaatg |
164 |
Q |
| |
|
|||| |||| ||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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|
| T |
9800524 |
taagccatgtaatgatcattgcaattcaaaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgtgcccaccaagttactcaatg |
9800623 |
T |
|
| Q |
165 |
aatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaattattttaaaaaa |
264 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||| ||||| ||||||||| |
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|
| T |
9800624 |
aatatggttatgaatgggtattaaatgtattagcatgtataaagcatcagcatatacatagagacactaacatctgaataccgataatta-tttaaaaaa |
9800722 |
T |
|
| Q |
265 |
taatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacaccaaaacacgcctatgatt-ataagcgtcgat |
363 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||| || | ||||||| ||||| ||| | ||||| |||||||||||||||| |||||| ||||| |
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|
| T |
9800723 |
taatataattcaatctattcacatgtatctatatcttgtcggtgtcgaatactgggacatatgagacacc-aaacacgcctatgattaataagcttcgat |
9800821 |
T |
|
| Q |
364 |
gacacataaattagtattgcaattcaccaaattaaaattacattcacttcaattgatataaggaagtcc |
432 |
Q |
| |
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| ||||||||||| ||||||||| ||||||| ||||||||||||| |||||||||||||||||||||| |
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|
| T |
9800822 |
gctacataaattagcattgcaatttaccaaatgaaaattacattcatttcaattgatataaggaagtcc |
9800890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 55 - 274
Target Start/End: Complemental strand, 45535176 - 45534957
Alignment:
| Q |
55 |
tcaatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaag |
154 |
Q |
| |
|
|||||| |||||||| ||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||| |
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|
| T |
45535176 |
tcaatgcgattaagagatgtaatgatcattgcagttgagaaaggccatacggccccttaacttagctaactaatttaaatgtatagttgcgcacaccaag |
45535077 |
T |
|
| Q |
155 |
ttactcaatgaatatggtttggaatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaatta |
254 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||| ||| ||||||||||||||||||| | | ||||||| |||||||||||||| ||||||| || ||||| |
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|
| T |
45535076 |
ttactcattgaatctggttaggactgggtgctaagtgtattagcatgtataaagcaacaacatatacatagagacactaacatgtgaacactgataatta |
45534977 |
T |
|
| Q |
255 |
ttttaaaaaataatataatt |
274 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
45534976 |
ttttaaaaaataatataatt |
45534957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 57 - 415
Target Start/End: Original strand, 44338329 - 44338689
Alignment:
| Q |
57 |
aatgtgattaagacatgaaatgatcattgcagtttagaaaggccatatggccccttaacttagctgactaatttaaatgtatatttgcgcagaccaagtt |
156 |
Q |
| |
|
|||||||| |||| ||| |||||||| ||||||| |||||||||||||||| |||||| |||| ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
44338329 |
aatgtgatcaagagatgtaatgatcactgcagttcagaaaggccatatggctccttaaattagttgactaatttaaaggtatatttgcgcacaccaagtt |
44338428 |
T |
|
| Q |
157 |
actcaatg-aatatggtttgg-aatgggtattaaatgtattagcatgtataaagaatcggaatatacacagagacactaacatctgaacaccgacaatta |
254 |
Q |
| |
|
| |||||| || |||||| || ||||| ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| |||||| |||||||| |
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|
| T |
44338429 |
agtcaatgaaacatggttaggaaatggctattaaatgtattagcatgtataaaacgtcgacatatacccagagacattaacatgtgaacaaagacaatta |
44338528 |
T |
|
| Q |
255 |
ttttaaaaaataatataattcaatataatcacatgtatctatatcttgtaggcgacgaatacggggacgtatcaaacac-caaaacacgcctatgattat |
353 |
Q |
| |
|
||| | |||||| | |||| |||||||||| ||||||||||||| ||| | |||||| ||||||| || |||| | | |||| | |||||| || |
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|
| T |
44338529 |
-tttgagaaataacacaattaaatataatcatatgtatctatatcatgtcgatctcgaatattgggacgtttcggacacgctagacacacatatgataat |
44338627 |
T |
|
| Q |
354 |
aagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattcacttcaa |
415 |
Q |
| |
|
|||| | |||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44338628 |
aagcattgatgctacataaattagcattgcaattcaccaaatgaaaattacattcacttcaa |
44338689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 45534943 - 45534829
Alignment:
| Q |
310 |
cgaatacggggacgtatcaaacaccaaaacacgcctatgattataagcgtcgatgacacataaattagtattgcaattcaccaaattaaaattacattca |
409 |
Q |
| |
|
||||||||||||||||| | |||||||| || ||||||||||||||| ||||| | ||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
45534943 |
cgaatacggggacgtattagacaccaaa-catgcctatgattataagtgtcgacgctacataaattagcattgcaattcaccaaataaaaattacattca |
45534845 |
T |
|
| Q |
410 |
cttcaattgatataag |
425 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
45534844 |
cttcaattgacataag |
45534829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 293
Target Start/End: Original strand, 34745205 - 34745241
Alignment:
| Q |
257 |
ttaaaaaataatataattcaatataatcacatgtatc |
293 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34745205 |
ttaaaaaataacataattcaatataatcacatgtatc |
34745241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 29519195 - 29519244
Alignment:
| Q |
241 |
aacaccgacaattattttaaaaaataatataattcaatataatcacatgt |
290 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||||||||| |||| |||||| |
|
|
| T |
29519195 |
aacaccgataataattttaaaaaatcatataattcaatgtaataacatgt |
29519244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 23095791 - 23095846
Alignment:
| Q |
367 |
acataaattagtattgcaattcaccaaattaaaattacattcacttcaattgatat |
422 |
Q |
| |
|
||||||||||| ||||||||| ||||||| |||||||| |||||| || ||||||| |
|
|
| T |
23095791 |
acataaattagcattgcaatttaccaaatgaaaattaccttcactacagttgatat |
23095846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 19679993 - 19680033
Alignment:
| Q |
254 |
attttaaaaaataatataattcaatataatcacatgtatct |
294 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
19679993 |
attttaaaaaataacataattgaatataatcacatgcatct |
19680033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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