View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8474_low_5 (Length: 212)
Name: NF8474_low_5
Description: NF8474
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8474_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 31090298 - 31090115
Alignment:
| Q |
14 |
aaaataacataagatggcatacaaagtagataatgaatatgattatctgttcaagattgtactcattggagattctggtgttggaaaatccaatattctc |
113 |
Q |
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| T |
31090298 |
aaaataacataagatggcatacaaagtagataatgaatatgattatctgttcaagattgtactcattggagattctggtgttggaaaatccaatattctc |
31090199 |
T |
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| Q |
114 |
tctaggtttacccgaaatgagttttgtcttgaatctaaatctaccattggtgttgaattcgctaccagaactatacaggttcat |
197 |
Q |
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| T |
31090198 |
tctaggtttacccgaaatgagttttgtcttgaatctaaatctaccattggtgttgaattcgctaccagaactatacaggttcat |
31090115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 24249547 - 24249409
Alignment:
| Q |
46 |
atgaatatgattatctgttcaagattgtactcattggagattctggtgttggaaaatccaatattctctctaggtttacccgaaatgagttttgtcttga |
145 |
Q |
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| T |
24249547 |
atgagtatgattacttgttcaagatcgttttgatcggggattctggtgttggtaaatccaacattctctctaggtttactagaaatgagttttgtttgga |
24249448 |
T |
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| Q |
146 |
atctaaatctaccattggtgttgaattcgctaccagaac |
184 |
Q |
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| T |
24249447 |
gtctaaatctactattggtgttgaattcgccaccagaac |
24249409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 178
Target Start/End: Complemental strand, 188681 - 188551
Alignment:
| Q |
48 |
gaatatgattatctgttcaagattgtactcattggagattctggtgttggaaaatccaatattctctctaggtttacccgaaatgagttttgtcttgaat |
147 |
Q |
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| T |
188681 |
gaatacgattatctgttcaaggtagtactgataggcgattctggtgttggtaaatcaaatcttctatcccgattcactcgcaatgaattttgtcttgagt |
188582 |
T |
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| Q |
148 |
ctaaatctaccattggtgttgaattcgctac |
178 |
Q |
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| T |
188581 |
ccaagtctactattggcgttgaattcgctac |
188551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 183
Target Start/End: Complemental strand, 4375118 - 4374981
Alignment:
| Q |
46 |
atgaatatgattatctgttcaagattgtactcattggagattctggtgttggaaaatccaatattctctctaggtttacccgaaatgagttttgtcttga |
145 |
Q |
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| T |
4375118 |
atgattatgattatctgtttaaggttgtgttgattggtgattctggtgttggaaaatccaaccttttgtcgagattcacaaaaaatgaatttagccttga |
4375019 |
T |
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| Q |
146 |
atctaaatctaccattggtgttgaattcgctaccagaa |
183 |
Q |
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| T |
4375018 |
atctaaatccaccattggggttgaatttgcaaccagaa |
4374981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 31789422 - 31789510
Alignment:
| Q |
90 |
ggtgttggaaaatccaatattctctctaggtttacccgaaatgagttttgtcttgaatctaaatctaccattggtgttgaattcgctac |
178 |
Q |
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| T |
31789422 |
ggtgttggtaaatcaaatcttctctctcgtttcaccaaaaacgagttcaatcttgaatccaaatccaccattggtgttgaattcgctac |
31789510 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 35195729 - 35195765
Alignment:
| Q |
144 |
gaatctaaatctaccattggtgttgaattcgctacca |
180 |
Q |
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| T |
35195729 |
gaatctaaatctactattggtgttgaattcgctacca |
35195765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 172
Target Start/End: Complemental strand, 34834511 - 34834465
Alignment:
| Q |
126 |
cgaaatgagttttgtcttgaatctaaatctaccattggtgttgaatt |
172 |
Q |
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| T |
34834511 |
cgaaatgagttttgtttggagtctaaatctaccattggagttgaatt |
34834465 |
T |
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