View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8475_low_4 (Length: 208)

Name: NF8475_low_4
Description: NF8475
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8475_low_4
NF8475_low_4
[»] chr6 (6 HSPs)
chr6 (103-189)||(27826019-27826105)
chr6 (18-66)||(27825932-27825980)
chr6 (18-62)||(27899001-27899045)
chr6 (18-62)||(33504465-33504509)
chr6 (18-62)||(9244809-9244853)
chr6 (26-62)||(32818645-32818681)
[»] chr2 (3 HSPs)
chr2 (103-189)||(7117659-7117745)
chr2 (18-62)||(18601305-18601349)
chr2 (18-62)||(4843403-4843447)
[»] chr3 (10 HSPs)
chr3 (19-62)||(49952197-49952240)
chr3 (18-62)||(24929157-24929201)
chr3 (18-51)||(13848848-13848881)
chr3 (18-62)||(52099779-52099823)
chr3 (18-62)||(52253835-52253879)
chr3 (20-62)||(34672669-34672711)
chr3 (18-62)||(24346199-24346243)
chr3 (18-62)||(27516260-27516304)
chr3 (18-62)||(40687019-40687063)
chr3 (18-62)||(43884959-43885003)
[»] chr1 (16 HSPs)
chr1 (19-62)||(41318462-41318505)
chr1 (18-58)||(741157-741197)
chr1 (18-58)||(11523164-11523204)
chr1 (18-62)||(19067292-19067336)
chr1 (18-62)||(19115182-19115226)
chr1 (18-62)||(43360332-43360376)
chr1 (18-62)||(46614507-46614551)
chr1 (18-53)||(23201954-23201989)
chr1 (18-51)||(39935356-39935389)
chr1 (18-62)||(2167738-2167782)
chr1 (18-62)||(10616242-10616286)
chr1 (18-62)||(11240668-11240712)
chr1 (18-62)||(16660017-16660061)
chr1 (18-50)||(38674231-38674263)
chr1 (18-62)||(39936230-39936274)
chr1 (18-62)||(52860596-52860640)
[»] chr4 (9 HSPs)
chr4 (18-62)||(33189174-33189218)
chr4 (18-62)||(34841065-34841109)
chr4 (18-62)||(44937077-44937121)
chr4 (18-53)||(56052678-56052713)
chr4 (18-62)||(39843577-39843621)
chr4 (18-62)||(43277439-43277483)
chr4 (18-61)||(50796316-50796359)
chr4 (18-62)||(22422800-22422844)
chr4 (18-62)||(55589880-55589924)
[»] chr7 (9 HSPs)
chr7 (18-52)||(14238770-14238804)
chr7 (18-62)||(43637353-43637397)
chr7 (18-61)||(32277520-32277563)
chr7 (118-148)||(41816691-41816721)
chr7 (18-51)||(43051796-43051829)
chr7 (18-62)||(22643919-22643963)
chr7 (18-62)||(40091067-40091111)
chr7 (18-62)||(46290483-46290527)
chr7 (18-62)||(46460092-46460136)
[»] chr8 (5 HSPs)
chr8 (18-62)||(2116541-2116585)
chr8 (20-62)||(33099632-33099674)
chr8 (18-62)||(22914475-22914519)
chr8 (18-62)||(38783689-38783733)
chr8 (18-62)||(43638443-43638487)
[»] chr5 (6 HSPs)
chr5 (18-62)||(35468218-35468262)
chr5 (18-62)||(38761334-38761378)
chr5 (18-61)||(38923949-38923992)
chr5 (18-52)||(32657901-32657935)
chr5 (18-62)||(28905570-28905614)
chr5 (18-62)||(28941965-28942009)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 27826019 - 27826105
Alignment:
Q  103 tgtgactgatttgttaaaagacaaaaatatccttgttttaaaagttgaattgtttatctatttgattgtaatttagatatattattt 189  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27826019 tgtgactgatttgttaaaagacaaaaatatcattgttttaaaagttgaattgtttatctatttgattgtaatttagatatattattt 27826105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 27825932 - 27825980
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttgctat 66  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| ||||    
T  27825932 agagagaaataaatgagaaataaagtagatttgatgagttgtttactat 27825980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 27899001 - 27899045
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||||| | ||||||||||||||||||| ||||||||    
T  27899001 agagagaaatagataaaaaatatagtagatttgatgggttgtttg 27899045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 33504509 - 33504465
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||||||| ||||||||| ||||||||| ||||||||    
T  33504509 agagagaaatagatgataaatatagtggatttgatgtgttgtttg 33504465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 9244809 - 9244853
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| || ||||||||  ||||||||||||||||||||||    
T  9244809 agagagaaaaaggtgagaaattgagtagatttgatgagttgtttg 9244853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Complemental strand, 32818681 - 32818645
Alignment:
Q  26 atagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  32818681 atagatgagaaatagagtagatttgatgggttgtttg 32818645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 103 - 189
Target Start/End: Complemental strand, 7117745 - 7117659
Alignment:
Q  103 tgtgactgatttgttaaaagacaaaaatatccttgttttaaaagttgaattgtttatctatttgattgtaatttagat-atattattt 189  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||  |||| |||||| ||||||||||||| |||||||||    
T  7117745 tgtgactaatttgttaaaagacaaaaatatccttgtcttaaaagttgaatt-attatttatttgtttgtaatttagataatattattt 7117659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 18601305 - 18601349
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||    
T  18601305 agagagaaatagatgagaaatagagtagatttgatgggttgtttg 18601349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 4843447 - 4843403
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||    
T  4843447 agagagaaagagatgagaaataaagtagatttgatgggttgtttg 4843403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 49952240 - 49952197
Alignment:
Q  19 gagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  49952240 gagagaaatagatgagaaatagagtagatttgatgagttgtttg 49952197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 24929157 - 24929201
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||||||||||||| |||||||||||||| |||||||    
T  24929157 agagagaaatagatgagaaatagagtagatttgatgaattgtttg 24929201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 13848848 - 13848881
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttga 51  Q
    ||||||||||||||||||||||||||||||||||    
T  13848848 agagagaaatagatgagaaatatagtagatttga 13848881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 52099823 - 52099779
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||    
T  52099823 agagagaaatatgtgagaaatagagtagatttgatgagttgtttg 52099779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 52253879 - 52253835
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| |||||||||||||||||||||||||  ||||||||    
T  52253879 agagagaaagagatgagaaatatagtagatttgataggttgtttg 52253835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 34672711 - 34672669
Alignment:
Q  20 agagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||    
T  34672711 agagaaaaagatgagaaataaagtagatttgatgggttgtttg 34672669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 24346243 - 24346199
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||  ||||||||| ||||||||||||| ||||||||    
T  24346243 agagagaaatatgtgagaaatagagtagatttgatgtgttgtttg 24346199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 27516304 - 27516260
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| |||||||||||| |||||||||||||  |||||||    
T  27516304 agagagaaaaagatgagaaatagagtagatttgatgtattgtttg 27516260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 40687063 - 40687019
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||  |||||||||||||||||||||||  |||||||    
T  40687063 agagagaaatatgtgagaaatatagtagatttgatgtattgtttg 40687019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 43884959 - 43885003
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||  ||||||||| ||||||||||||| ||||||||    
T  43884959 agagagaaatatgtgagaaatagagtagatttgatgtgttgtttg 43885003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 41318462 - 41318505
Alignment:
Q  19 gagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  41318462 gagagaaatagatgagaaatagagtagatttgatgagttgtttg 41318505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 741197 - 741157
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttg 58  Q
    ||||||||| |||||||||||||||||||||||||| ||||    
T  741197 agagagaaagagatgagaaatatagtagatttgatgtgttg 741157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 11523164 - 11523204
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttg 58  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  11523164 agagagaaatagatgagaaatagagtagatttgatgggttg 11523204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 19067292 - 19067336
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||    
T  19067292 agagagaaagagatgagaaatagagtagatttgatgtgttgtttg 19067336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 19115182 - 19115226
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||    
T  19115182 agagagaaagagatgagaaatagagtagatttgatgtgttgtttg 19115226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 43360332 - 43360376
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||||||||||||| |||||||||||||  |||||||    
T  43360332 agagagaaatagatgagaaatagagtagatttgatgtattgtttg 43360376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 46614551 - 46614507
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||||    
T  46614551 agagataaatagatgagaaatagagtagatttgatgtgttgtttg 46614507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 23201989 - 23201954
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatg 53  Q
    |||||||||||||||||||||| |||||||||||||    
T  23201989 agagagaaatagatgagaaatagagtagatttgatg 23201954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 39935356 - 39935389
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttga 51  Q
    |||||||||||| |||||||||||||||||||||    
T  39935356 agagagaaataggtgagaaatatagtagatttga 39935389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 2167782 - 2167738
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||  ||||||||| ||||||||||||| ||||||||    
T  2167782 agagagaaatatgtgagaaatagagtagatttgatgtgttgtttg 2167738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 10616286 - 10616242
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||  ||||||||| ||||||||||||| ||||||||    
T  10616286 agagagaaatatgtgagaaataaagtagatttgatgtgttgtttg 10616242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 11240712 - 11240668
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||  ||||||||||||||||| ||||| ||||||||    
T  11240712 agagagaaatatgtgagaaatatagtagatatgatgtgttgtttg 11240668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 16660061 - 16660017
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| || |||||||||||||||||||||||  |||||||    
T  16660061 agagagaaaaaggtgagaaatatagtagatttgatgtattgtttg 16660017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 38674231 - 38674263
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttg 50  Q
    ||||||||| |||||||||||||||||||||||    
T  38674231 agagagaaaaagatgagaaatatagtagatttg 38674263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 39936230 - 39936274
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||| ||||||||||| ||| ||||||||| ||||||||    
T  39936230 agagagaaatggatgagaaatagagttgatttgatgggttgtttg 39936274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 52860640 - 52860596
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| |  ||||||||||||||||||||||| ||||||||    
T  52860640 agagagaaaaaagtgagaaatatagtagatttgatgggttgtttg 52860596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 33189218 - 33189174
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  33189218 agagagaaatagataagaaataaagtagatttgatgagttgtttg 33189174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 34841065 - 34841109
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||    
T  34841065 agagagaaatagatgagaaatagagtagatttgatgggttgtttg 34841109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 44937077 - 44937121
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||    
T  44937077 agagagaaagagatgagaaatatagtagatttgatgggttgtttg 44937121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 56052713 - 56052678
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatg 53  Q
    ||||||||||||||||||||||||||||||||||||    
T  56052713 agagagaaatagatgagaaatatagtagatttgatg 56052678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 39843621 - 39843577
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||    
T  39843621 agagagaaatatgtgagaaatatagtagatttgatgtgttgtttg 39843577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 43277439 - 43277483
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||||    
T  43277439 agagagaaatagatgaaaaatagagtagatttgatgggttgtttg 43277483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 50796316 - 50796359
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgttt 61  Q
    |||||||||||||||||||||| ||||||||||||  |||||||    
T  50796316 agagagaaatagatgagaaatagagtagatttgataggttgttt 50796359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 22422800 - 22422844
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||  ||||||||| |||||||||||||| |||||||    
T  22422800 agagagaaatatgtgagaaatagagtagatttgatgaattgtttg 22422844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 55589880 - 55589924
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||  ||||||||||||||||||||||||  ||||||||    
T  55589880 agagagaaagggatgagaaatatagtagatttgataggttgtttg 55589924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 14238804 - 14238770
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgat 52  Q
    |||||||||||||||||||||||||||||||||||    
T  14238804 agagagaaatagatgagaaatatagtagatttgat 14238770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 43637353 - 43637397
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||    
T  43637353 agagagagatagatgagaaatagagtagatttgatgggttgtttg 43637397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 32277563 - 32277520
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgttt 61  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||    
T  32277563 agagagaaagagatgagaaatagagtagatttgatgtgttgttt 32277520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 148
Target Start/End: Original strand, 41816691 - 41816721
Alignment:
Q  118 aaaagacaaaaatatccttgttttaaaagtt 148  Q
    |||||||||||||||||||||||||||||||    
T  41816691 aaaagacaaaaatatccttgttttaaaagtt 41816721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 43051796 - 43051829
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttga 51  Q
    |||||||||||| |||||||||||||||||||||    
T  43051796 agagagaaataggtgagaaatatagtagatttga 43051829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 22643919 - 22643963
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| |||||||||||| |||||||||||||  |||||||    
T  22643919 agagagaaaaagatgagaaatagagtagatttgatgtattgtttg 22643963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 40091067 - 40091111
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| | |||||||||||||||||||||| | ||||||||    
T  40091067 agagagaaaaatatgagaaatatagtagatttgaagggttgtttg 40091111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 46290483 - 46290527
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| ||||||||||||| ||||||||||||  |||||||    
T  46290483 agagagaaagagatgagaaatatggtagatttgatggattgtttg 46290527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 46460136 - 46460092
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||| |||||||||||||| ||||||||||| | ||||||||    
T  46460136 agagagagatagatgagaaatagagtagatttgaggggttgtttg 46460092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 2116585 - 2116541
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||    
T  2116585 agagagaaatatgtgagaaatatagtagatttgatgtgttgtttg 2116541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 33099674 - 33099632
Alignment:
Q  20 agagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||| |||||||||||| ||||||||||||| ||||||||    
T  33099674 agagaaagagatgagaaatagagtagatttgatgggttgtttg 33099632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 22914519 - 22914475
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| |||||||||||| |||||||||||||  |||||||    
T  22914519 agagagaaaaagatgagaaatagagtagatttgatgtattgtttg 22914475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 38783733 - 38783689
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| |  |||||||||||||||||||||||| |||||||    
T  38783733 agagagaaagatgtgagaaatatagtagatttgatgaattgtttg 38783689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 43638487 - 43638443
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    |||||||||  |||||||||||||||||||||||||  |||||||    
T  43638487 agagagaaaatgatgagaaatatagtagatttgatgtattgtttg 43638443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 35468218 - 35468262
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||||    
T  35468218 agagagaaatagatgagcaatagagtagatttgatgggttgtttg 35468262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 38761378 - 38761334
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||| |||||||||||||||| ||||||||||||| ||||||||    
T  38761378 agagaaaaatagatgagaaatagagtagatttgatgggttgtttg 38761334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 38923992 - 38923949
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgttt 61  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||    
T  38923992 agagagaaagagatgagaaatagagtagatttgatgtgttgttt 38923949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 32657901 - 32657935
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgat 52  Q
    |||||||||||||||||||||| ||||||||||||    
T  32657901 agagagaaatagatgagaaatagagtagatttgat 32657935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 28905614 - 28905570
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| || |||||||||||||||||||||||  |||||||    
T  28905614 agagagaaaaaggtgagaaatatagtagatttgatgtattgtttg 28905570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 28942009 - 28941965
Alignment:
Q  18 agagagaaatagatgagaaatatagtagatttgatgagttgtttg 62  Q
    ||||||||| || |||||||||||||||||||||||  |||||||    
T  28942009 agagagaaaaaggtgagaaatatagtagatttgatgtattgtttg 28941965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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