View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8476_high_1 (Length: 445)

Name: NF8476_high_1
Description: NF8476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8476_high_1
NF8476_high_1
[»] chr4 (12 HSPs)
chr4 (21-434)||(6030518-6030930)
chr4 (145-252)||(3750049-3750155)
chr4 (145-274)||(5570099-5570227)
chr4 (190-286)||(5851976-5852072)
chr4 (187-286)||(5554340-5554439)
chr4 (145-274)||(5885290-5885418)
chr4 (187-295)||(5859202-5859310)
chr4 (57-117)||(5894366-5894426)
chr4 (85-134)||(5554222-5554271)
chr4 (93-133)||(5565584-5565624)
chr4 (57-133)||(5559994-5560070)
chr4 (145-205)||(5560106-5560165)
[»] chr8 (2 HSPs)
chr8 (69-134)||(1486246-1486311)
chr8 (145-279)||(23268519-23268652)
[»] scaffold0454 (1 HSPs)
scaffold0454 (69-117)||(1431-1479)


Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 21 - 434
Target Start/End: Complemental strand, 6030930 - 6030518
Alignment:
Q  21 agcagaaaatttaacggttgagaaatctaaatacttaggtctaggcccataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaa 120  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6030930 agcagaaaatttgacggttgagaaatctaaatacttaggtctaggcccataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaa 6030831  T
Q  121 tgttttgattccatgtcttcaatttgagattggttttt-aattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttg 219  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  6030830 tgttttgattccatgtcttcaatttgagattggttttttaattgaagcaacaatgagggttgat-cgccaagacatttggcagaggtaacagagaatttg 6030732  T
Q  220 aaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattgctgtctactgtgagtctcaaccagtgtagtcat 319  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6030731 aaactgatgtaaatgcagtagtagcatagaaggaaggaaaacaatgaaagtaatgcaattttcattgctgtctactgtgagtctcaaccagtgtagtcat 6030632  T
Q  320 attaatttactggttctttgtccttcacttttgaaaaatagtatagcagtaagacactagagaactttagcaaattatttataaccagaagtcggtagag 419  Q
    ||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6030631 attaatttactggttctttgtccttcacttttgtaaaata-agtagcagtaagacactagagaactttagcaaattatttataaccagaagtcggtagag 6030533  T
Q  420 gtacaaacaccaaac 434  Q
    |||||||||||||||    
T  6030532 gtacaaacaccaaac 6030518  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 252
Target Start/End: Original strand, 3750049 - 3750155
Alignment:
Q  145 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 244  Q
    |||||||| ||||||||||||||||||||||  |||||| | |||||||||||||||||||||||| ||| || ||||||||  || |||| ||||||||    
T  3750049 tgagattgttttttaattgaagcaacaatgattgttgatcc-tcaagacatttggcagaggtaacaaagatttggaaactgagatatatgctgtagtagc 3750147  T
Q  245 atagaagg 252  Q
    | ||||||    
T  3750148 aaagaagg 3750155  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 145 - 274
Target Start/End: Complemental strand, 5570227 - 5570099
Alignment:
Q  145 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 244  Q
    |||||||  |||||| ||| |||||||| ||  |||||| | |||||||||||||| |||| ||||| || || |||| |||  || |||||||||||||    
T  5570227 tgagattattttttagttggagcaacaacgattgttgatcc-tcaagacatttggctgaggcaacagtgatttggaaagtgagatatatgcagtagtagc 5570129  T
Q  245 atagaaggcaggaaaacaatgaaagtaatg 274  Q
    |||||||| ||||||||||||||| |||||    
T  5570128 atagaaggaaggaaaacaatgaaactaatg 5570099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 5852072 - 5851976
Alignment:
Q  190 agacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg 286  Q
    ||||||||||| |||| ||| | || || ||||||||| ||||||||||||||||| |||| | |||||||||||| |||||||| |||| ||||||    
T  5852072 agacatttggctgaggcaacggtgatttggaaactgatataaatgcagtagtagcagagaatgaaggaaaacaatggaagtaatgtaattctcattg 5851976  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 187 - 286
Target Start/End: Original strand, 5554340 - 5554439
Alignment:
Q  187 tcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg 286  Q
    ||||||||||||||||||| || ||||| || ||||||  | || |||||||| |||||  ||||| ||||||||||||| | ||||| |||||||||||    
T  5554340 tcaagacatttggcagaggcaaaagagatttggaaactattatatatgcagtaatagcagcgaaggaaggaaaacaatgacactaatgtaattttcattg 5554439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 274
Target Start/End: Complemental strand, 5885418 - 5885290
Alignment:
Q  145 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 244  Q
    |||||||| |||||||||| ||||||| |||  |||||| | ||||||||||||||||||| || ||||   | |||| |||   |||||||||||||||    
T  5885418 tgagattgttttttaattggagcaacagtgattgttgatcc-tcaagacatttggcagaggcaagagagttctggaaagtgaaaaaaatgcagtagtagc 5885320  T
Q  245 atagaaggcaggaaaacaatgaaagtaatg 274  Q
    | | ||||  ||||||| ||||||||||||    
T  5885319 agataaggatggaaaacgatgaaagtaatg 5885290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 295
Target Start/End: Original strand, 5859202 - 5859310
Alignment:
Q  187 tcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagcatagaaggcaggaaaacaatgaaagtaatgcaattttcattg 286  Q
    |||||||||||||||||||  | ||||| || |||| |||| || ||||||||| || | |||||  |||||||||||||||||| || |||| ||||||    
T  5859202 tcaagacatttggcagaggctaaagagatttggaaagtgatatatatgcagtagcagaagagaagaaaggaaaacaatgaaagtattgtaattctcattg 5859301  T
Q  287 ctgtctact 295  Q
     ||| ||||    
T  5859302 ttgtttact 5859310  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 5894426 - 5894366
Alignment:
Q  57 aggtctaggcccataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaag 117  Q
    ||||| ||||| ||||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  5894426 aggtcaaggccaataacatgtccctcattgtcacaagttacaccactccaattgcagcaag 5894366  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 5554222 - 5554271
Alignment:
Q  85 tgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccat 134  Q
    ||||| |||||||||||||||||||||||||||  ||| |||||||||||    
T  5554222 tgtcacaagttacaccgctccaattgcagcaagctatgctttgattccat 5554271  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 5565584 - 5565624
Alignment:
Q  93 gttacaccgctccaattgcagcaaggaatgttttgattcca 133  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  5565584 gttacaccactccaattgcagcaaggaatgctttgattcca 5565624  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 5559994 - 5560070
Alignment:
Q  57 aggtctaggcccataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattcca 133  Q
    ||||| ||||| ||||||||||  ||| ||||| | || ||||| |||||||||||||||| | || ||||||||||    
T  5559994 aggtcaaggccaataacatgtccctcaatgtcacatgtaacacccctccaattgcagcaagcagtgctttgattcca 5560070  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 5560106 - 5560165
Alignment:
Q  145 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagagg 205  Q
    |||||||| ||||||||||| ||||||||||  ||||| || ||||||||||||| |||||    
T  5560106 tgagattgttttttaattgatgcaacaatgattgttga-tcctcaagacatttggtagagg 5560165  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 1486246 - 1486311
Alignment:
Q  69 ataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaaggaatgttttgattccat 134  Q
    ||||||||||  ||||||||| |||| ||||| |||||||||||||||| | |||||| |||||||    
T  1486246 ataacatgtccctcattgtcacaagtaacaccactccaattgcagcaagtagtgtttttattccat 1486311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 279
Target Start/End: Original strand, 23268519 - 23268652
Alignment:
Q  145 tgagattggtttttaattgaagcaacaatgagggttgattcgtcaagacatttggcagaggtaacagagaatttgaaactgatgtaaatgcagtagtagc 244  Q
    |||||||| ||||||||||||||||||  |   |||||| | ||||||||||| ||||||| || |||   || ||||  ||   |||||||||||| ||    
T  23268519 tgagattgttttttaattgaagcaacagagttcgttgatcc-tcaagacatttagcagaggaaagagaagtttggaaaaagaaaaaaatgcagtagtggc 23268617  T
Q  245 atagaaggcaggaaaacaatgaaagtaatgcaatt 279  Q
    | | |||| ||||||||||||||||||||| ||||    
T  23268618 agaaaaggaaggaaaacaatgaaagtaatgtaatt 23268652  T

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Target: scaffold0454 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Original strand, 1431 - 1479
Alignment:
Q  69 ataacatgtcattcattgtcaaaagttacaccgctccaattgcagcaag 117  Q
    ||||||||||  ||||||||| |||| ||||| ||||||||||||||||    
T  1431 ataacatgtccctcattgtcacaagtaacaccactccaattgcagcaag 1479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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