View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8476_high_2 (Length: 430)
Name: NF8476_high_2
Description: NF8476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8476_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 421
Target Start/End: Complemental strand, 26484947 - 26484528
Alignment:
| Q |
17 |
agatatgcagggttagacatttccgattgcatcatttgaaaattttgagtaaacacctgtaaagatgaaataatttaggagcactttcagcatgcattct |
116 |
Q |
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| T |
26484947 |
agatatgcagggttagacatttccgattgcatcatttgaaaattttgagtaaacacctgtaaagatcaaataatttaggagcactt-cagcatgcattct |
26484849 |
T |
|
| Q |
117 |
aaaataatttatggctgtgttgtgattcgcgatactgtggataatcgcggtcaaatgttgactcataagctttaattacggtcaaatgtagctgatacaa |
216 |
Q |
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| T |
26484848 |
aaaataatttatggctgtgttgtgattcgcgatactgtggataatcgcggtcaaatgttgactcataagctttaattacggtcaaatgtagctgatacag |
26484749 |
T |
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| Q |
217 |
ccttaaatttctacaacttgcattgtccttacctctttggcaaacaattcatcaatgttgaagtcaagtcttgggtttacagctgctaatttcattgaca |
316 |
Q |
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| T |
26484748 |
ccttaaatttctacaacttgcattgtccttacctctttggcaaacaattcatcaatgttgaagtcaagtcttgggtttacagctgctaatttcattgaca |
26484649 |
T |
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| Q |
317 |
agaactgcatttggtgataatgtacagttcagt----------------tattcttaaaatagataccatattataaactaaaacatgatagatcaaaca |
400 |
Q |
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| T |
26484648 |
agaactgcatttggtgataatgtacagttcagttagatggacttgaaactattcttaaaatagataccatattataaactaaaacatgatagatcaaaca |
26484549 |
T |
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| Q |
401 |
ggactagaactccaaactcga |
421 |
Q |
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| T |
26484548 |
ggactagaactctaacctcga |
26484528 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 265 - 325
Target Start/End: Complemental strand, 54616250 - 54616190
Alignment:
| Q |
265 |
tcatcaatgttgaagtcaagtcttgggtttacagctgctaatttcattgacaagaactgca |
325 |
Q |
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| T |
54616250 |
tcatcaatattgaaatcaagccttggattcacagtagctaatttcattgacaagaactgca |
54616190 |
T |
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