View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8476_high_3 (Length: 391)
Name: NF8476_high_3
Description: NF8476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8476_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 375
Target Start/End: Original strand, 36025457 - 36025818
Alignment:
| Q |
14 |
tatactcaaattttaaaaagaaggggagaattagttgtgtgtcattatgaaaaccttgaaatattgaaccaaacgatgtcatagatactcaaataaaaga |
113 |
Q |
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| T |
36025457 |
tatactcaaattttaaaaagaaggggagaattagttgtgtgtcattatgaaaaccttgaaatattgaaccaaacgatgtcatagatactcaaataaaaga |
36025556 |
T |
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| Q |
114 |
taaaagggaaataattacatgtgtgtggggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtccttgttcaatcccgtgtgtta |
213 |
Q |
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| T |
36025557 |
taaaagggaaataattacatgtgtgtggggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtccttgttcaatcccgtgtgtta |
36025656 |
T |
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| Q |
214 |
ttttaaaaaccatcgcctttggcgcgaaaatccgttatggaaagaattcgactgaatctagttcgagtcgaccccaaacttgagtcggtaacggagtcaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36025657 |
ttttaaaaaccatcgcctttggcgcgaaaatccgttatggaaagaattcgactgaatctagttcgagtcgaccccgaacttgagtcggtaacggagtcaa |
36025756 |
T |
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| Q |
314 |
gcctttgtggctgtgcgtgagtaaaggagtaacaactatattgaagatgatgatattaatat |
375 |
Q |
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| T |
36025757 |
gcctttgtggctgtgcgtgagtaaaggagtaacaactatattgaagatgataatattaatat |
36025818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 33085022 - 33084966
Alignment:
| Q |
138 |
gtggggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtcct |
194 |
Q |
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| T |
33085022 |
gtggggggttgggtagctcaactggtttgagctaagggatatggagttggaggtcct |
33084966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 33872906 - 33872854
Alignment:
| Q |
140 |
ggggggttgggtaactcaagtggcttgagc-caagggaaaatgagttggaggt |
191 |
Q |
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| T |
33872906 |
ggggggttgggtaactcaactggtttgagctaaagggaaaaggagttggaggt |
33872854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 16934442 - 16934346
Alignment:
| Q |
100 |
actcaaataaaagataaaa-----gggaaataattacatgtgtgtggggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggt |
191 |
Q |
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| T |
16934442 |
actcaaataaaagaaaaaagaattgggaaatatttacatgtatgtggggggttgggtaactcaagttgtttgagccaagggaaaatgagttggaggt |
16934346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 28409521 - 28409470
Alignment:
| Q |
142 |
ggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtcc |
193 |
Q |
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| T |
28409521 |
ggggttgggtaactcaactgggttgagctaagggaagatgagttggaggtcc |
28409470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 28590456 - 28590403
Alignment:
| Q |
141 |
gggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtcct |
194 |
Q |
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| T |
28590456 |
gggggttgggtaactcaactggtttgagctaagggacaaggtgttggaggtcct |
28590403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 26009784 - 26009838
Alignment:
| Q |
140 |
ggggggttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtcct |
194 |
Q |
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| T |
26009784 |
ggggggttgggtagctcaactggtttgagccaagggataaagagttggaggtcct |
26009838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 5251942 - 5251894
Alignment:
| Q |
146 |
ttgggtaactcaagtggcttgagccaagggaaaatgagttggaggtcct |
194 |
Q |
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| T |
5251942 |
ttgggtagctcaactggtttgagccaagggaaaaggagttggaggtcct |
5251894 |
T |
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