View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8476_low_5 (Length: 300)
Name: NF8476_low_5
Description: NF8476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8476_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 26 - 284
Target Start/End: Complemental strand, 41555853 - 41555595
Alignment:
| Q |
26 |
agcagagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaatga |
125 |
Q |
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| T |
41555853 |
agcagagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaatga |
41555754 |
T |
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| Q |
126 |
gagaggttccatttgattccgcaaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagccat |
225 |
Q |
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| T |
41555753 |
gagaggttccatttgattccgcaaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagccat |
41555654 |
T |
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| Q |
226 |
gaatgtatctttgatgagttcttgagtggaattgatatatattgaatattgatgtaatt |
284 |
Q |
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| T |
41555653 |
ggatgtatctttgatgagttcttgagtggaattgatatatattgaatattgatgtaatt |
41555595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 41560502 - 41560408
Alignment:
| Q |
29 |
agagagaaatcaatgattgggatggaagctgcaatctcatctgcaacatcaataatatcaccatgttctgtgagggagtggtaattggaaggaat |
123 |
Q |
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| T |
41560502 |
agagagaaatcaatgactgggatggaagctgcaagctcctctgtaacatcaacaatatcatcaggttctgcgagggagtggtaacttgaaggaat |
41560408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 239
Target Start/End: Complemental strand, 41560404 - 41560313
Alignment:
| Q |
148 |
aaaggctttgatgcttgaaatatttgatgtatgaacctttgttggttctgatgatgaaattgtagtagctgaagccatgaatgtatctttga |
239 |
Q |
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| T |
41560404 |
aaaggctttgatacttgaaatatttgatgcatcaacttttgtaggttctgatgatgaaatgaaaggagctgaagccatggatgtatatttga |
41560313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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