View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8476_low_7 (Length: 260)

Name: NF8476_low_7
Description: NF8476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8476_low_7
NF8476_low_7
[»] chr7 (1 HSPs)
chr7 (1-243)||(26411433-26411677)
[»] chr1 (2 HSPs)
chr1 (55-98)||(8034463-8034506)
chr1 (1-61)||(15377242-15377303)
[»] chr4 (4 HSPs)
chr4 (1-61)||(48163934-48163990)
chr4 (5-47)||(10736659-10736701)
chr4 (5-47)||(10950428-10950470)
chr4 (65-98)||(39318003-39318036)
[»] chr3 (2 HSPs)
chr3 (5-47)||(10241563-10241605)
chr3 (5-47)||(38452422-38452464)
[»] chr6 (2 HSPs)
chr6 (1-61)||(21790366-21790427)
chr6 (1-61)||(21793601-21793662)
[»] chr5 (2 HSPs)
chr5 (1-61)||(41291857-41291918)
chr5 (62-98)||(5180107-5180143)
[»] chr8 (1 HSPs)
chr8 (62-98)||(9264811-9264847)
[»] chr2 (1 HSPs)
chr2 (62-98)||(9747090-9747126)


Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 26411677 - 26411433
Alignment:
Q  1 atattattctttaatttctaaaacttggaacttttaagagttaaaaatttaactcacattattt--tttgttgataaagctagaaaattgcaataaaaga 98  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||    
T  26411677 atattattctttaattcctaaaacttgaaacttttaagagttaaaaatttaactcacattttttgttttgttgataaagctagaaaattgcaataaaaga 26411578  T
Q  99 tgaatagtagaaaatcacaccaaacttgattctcaatagttgacaaacttcccggataattatctttcttatagtttattgtatgannnnnnnnaatgac 198  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||    
T  26411577 tgaatagtagaaaatcacacggaacttgattctcaatagttgacaaacttcccggataattatctttcttatagtttattgtatgattttttttaatgac 26411478  T
Q  199 aaaacaaaaagaaaataaggcacaagcggacaccaaaaaagagga 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  26411477 aaaacaaaaagaaaataaggcacaagcggacaccaaaaaagagga 26411433  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 98
Target Start/End: Complemental strand, 8034506 - 8034463
Alignment:
Q  55 cacattattttttgttgataaagctagaaaattgcaataaaaga 98  Q
    |||||| |||||||||||||||||||||||| ||||||||||||    
T  8034506 cacatttttttttgttgataaagctagaaaaatgcaataaaaga 8034463  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15377242 - 15377303
Alignment:
Q  1 atattattctttaatttctaaaacttggaacttttaagagtt-aaaaatttaactcacatta 61  Q
    |||||||||||||||||||||||  |  |||||||||||||| |||||||||||||| ||||    
T  15377242 atattattctttaatttctaaaaggtaaaacttttaagagttaaaaaatttaactcaaatta 15377303  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 48163990 - 48163934
Alignment:
Q  1 atattattctttaatttctaaaacttggaacttttaagagttaaaaatttaactcacatta 61  Q
    |||||||||||||||| ||||||    |||||||||||||||||||| |||||||| ||||    
T  48163990 atattattctttaattcctaaaa----gaacttttaagagttaaaaaattaactcaaatta 48163934  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 10736659 - 10736701
Alignment:
Q  5 tattctttaatttctaaaacttggaacttttaagagttaaaaa 47  Q
    |||||||||||| |||||| || ||||||||||||||||||||    
T  10736659 tattctttaattcctaaaagttagaacttttaagagttaaaaa 10736701  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 10950428 - 10950470
Alignment:
Q  5 tattctttaatttctaaaacttggaacttttaagagttaaaaa 47  Q
    |||||||||||| |||||| || ||||||||||||||||||||    
T  10950428 tattctttaattcctaaaagttagaacttttaagagttaaaaa 10950470  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 98
Target Start/End: Complemental strand, 39318036 - 39318003
Alignment:
Q  65 tttgttgataaagctagaaaattgcaataaaaga 98  Q
    ||||||||||||||||||||| ||||||||||||    
T  39318036 tttgttgataaagctagaaaaatgcaataaaaga 39318003  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 10241563 - 10241605
Alignment:
Q  5 tattctttaatttctaaaacttggaacttttaagagttaaaaa 47  Q
    |||||||||||| |||||| || ||||||||||||||||||||    
T  10241563 tattctttaattcctaaaagtttgaacttttaagagttaaaaa 10241605  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 38452422 - 38452464
Alignment:
Q  5 tattctttaatttctaaaacttggaacttttaagagttaaaaa 47  Q
    |||||||||||| |||||| || ||||||||||||||||||||    
T  38452422 tattctttaattcctaaaagttagaacttttaagagttaaaaa 38452464  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21790366 - 21790427
Alignment:
Q  1 atattattctttaatttctaaaacttggaacttttaagag-ttaaaaatttaactcacatta 61  Q
    ||||||||||| |||| |||||| || ||||||||||||| ||||||||| |||||| ||||    
T  21790366 atattattcttcaattcctaaaagttagaacttttaagagtttaaaaattcaactcagatta 21790427  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21793601 - 21793662
Alignment:
Q  1 atattattctttaatttctaaaacttggaacttttaagag-ttaaaaatttaactcacatta 61  Q
    ||||||||||| |||| |||||| || ||||||||||||| ||||||||| |||||| ||||    
T  21793601 atattattcttcaattcctaaaagttagaacttttaagagtttaaaaattcaactcagatta 21793662  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 41291918 - 41291857
Alignment:
Q  1 atattattctttaatttctaaaacttggaacttttaagag-ttaaaaatttaactcacatta 61  Q
    ||||||||||| |||| |||||| || ||||||||||||| ||||||||| |||||| ||||    
T  41291918 atattattcttcaattcctaaaagttagaacttttaagagtttaaaaattcaactcagatta 41291857  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 5180107 - 5180143
Alignment:
Q  62 ttttttgttgataaagctagaaaattgcaataaaaga 98  Q
    |||||| |||| |||||||||||||||||||||||||    
T  5180107 tttttttttgacaaagctagaaaattgcaataaaaga 5180143  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 9264847 - 9264811
Alignment:
Q  62 ttttttgttgataaagctagaaaattgcaataaaaga 98  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  9264847 tttttttttgataaagctagaaaaatgcaataaaaga 9264811  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 9747126 - 9747090
Alignment:
Q  62 ttttttgttgataaagctagaaaattgcaataaaaga 98  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  9747126 tttttttttgataaagctagaaaaatgcaataaaaga 9747090  T

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