View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8476_low_8 (Length: 243)
Name: NF8476_low_8
Description: NF8476
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8476_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 46159926 - 46160148
Alignment:
| Q |
1 |
gcgttttctttaatcatttgttactagttgttaacgaatattagtgtttaatttaatcatcaacaatttatgttactcactttacatttgttgttcactt |
100 |
Q |
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| T |
46159926 |
gcgttttctttaatcatttgttactagttgttaacgaatattagtgtttaatttaatcatcaacaatttatattactcactttacatttgttgttcactt |
46160025 |
T |
|
| Q |
101 |
tagaagagttagataaaaaattgaacctcttaattaatttcatgttatggtgtttgtctataggaaagcaagtattgttttttcagatgacacgttgccg |
200 |
Q |
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| T |
46160026 |
tagaagagtta-ataaaaaattgaacctcttaattaatttcatgttatggtgtttgtctataggaaagcaagtattg-tttttcagatgacacgttgccg |
46160123 |
T |
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| Q |
201 |
gatggatatagtgtgaggaaaggtg |
225 |
Q |
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| T |
46160124 |
gatggatatagtgtgaggaaaggtg |
46160148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 46166787 - 46167010
Alignment:
| Q |
2 |
cgttttctttaatcatttgttactagttgttaacgaatattagtgtttaatttaatcatcaacaatttatgttactcactttacatttgttgttcacttt |
101 |
Q |
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| T |
46166787 |
cgttttcttgaatcttctgttactagttgttaaagaatattagtctttaatttaatcatcaacaatttatattactcactttacatttgttgttcacttt |
46166886 |
T |
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| Q |
102 |
agaagagttagat-aaaaaattgaacctcttaattaatttcatgttatggtgtttgtctataggaaagcaagtattgttttttcagatgacacgttgccg |
200 |
Q |
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| T |
46166887 |
agaagagttagataaaaaaattgaacctcttaactagtttcatgttatggtgtttgtctataggaaagcaagtattg-tttttcagatgacacgttgccg |
46166985 |
T |
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| Q |
201 |
gatggatatagtgtgaggaaaggtg |
225 |
Q |
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| T |
46166986 |
gatggatatagtgttacgaaaggtg |
46167010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 5948874 - 5948842
Alignment:
| Q |
3 |
gttttctttaatcatttgttactagttgttaac |
35 |
Q |
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| T |
5948874 |
gttttctttaatcatttgttactagttattaac |
5948842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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