View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8477_high_1 (Length: 569)

Name: NF8477_high_1
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8477_high_1
NF8477_high_1
[»] chr6 (2 HSPs)
chr6 (3-555)||(20114964-20115515)
chr6 (376-460)||(21945074-21945155)
[»] chr4 (1 HSPs)
chr4 (366-403)||(5812172-5812209)


Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 3 - 555
Target Start/End: Complemental strand, 20115515 - 20114964
Alignment:
Q  3 aaattcaacttctatatcacttttttcaactttgtatataccgaaaacaatagagggtcaaaaatacaatgaatatcaa-ttacagagttagaatatatg 101  Q
    ||||||||||| ||||||||||||||| ||||| ||||||| |||||||||||| ||||||||||| || || |||||| ||||| ||||||||||| ||    
T  20115515 aaattcaacttttatatcacttttttcgactttatatatactgaaaacaatagaaggtcaaaaatataaagagtatcaaattacatagttagaatatgtg 20115416  T
Q  102 tttcatttacataatcatttcttagactttgtttataatataaggtcaatttgaacaattaaccctgtactttattttaaatttagttgcaaatctcaga 201  Q
     ||  |||| |  |||||||  ||||||||||||  | || ||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  20115415 ctttttttaaaagatcattt--tagactttgtttgcattacaagttcaatttaaacaattaaccctatactttattttaaatttagttgcaaatctcaga 20115318  T
Q  202 cacacaaacattgagcagtgggaaaacacagttaagaaacatttctaatacaatcttggtggttctacaaatggttgatgtagtggcaaaaaggaacaac 301  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20115317 cacacaaacattgagcagtgggaaaatacagataagaaacatttctaatacaattttggtggttctacaaatggttgatgtagtggcaaaaaggaacaac 20115218  T
Q  302 ttgtttttattggtatagaaaacaatatatacacatacaattcaacataaaataaaaaacatacacctgaatcaaggagttttttgcatagcttgcttct 401  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20115217 ttgtttttattggtatagaaaacaacatacacacaaacaattcaacataaaataaaaaacatacacctgaatcaaggagttttttgcatagcttgtttct 20115118  T
Q  402 tcgacgtcacctccattcatgtgcagtatgtgtgctagatccattcttgtttctgttatctttcttaattaatttcagggtacttttccttttatgatta 501  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20115117 tcgacgtcacctccattcatgtgcagtatgtgtgctagatccattcttgtttctgttatctttcttaattaatttctgggtacttttccttttatgatta 20115018  T
Q  502 tgcgtttatatagatgaatcatgtatgaaagttactataaaatactttgttttt 555  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20115017 tgcgtttatatagatgaataatgtatgaaagttactataaaatactttgttttt 20114964  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 376 - 460
Target Start/End: Original strand, 21945074 - 21945155
Alignment:
Q  376 aggagttttttgcatagcttgcttcttcgacgtcacctccattcatgtgcagtatgtgtgctagatccattcttgtttctgttat 460  Q
    ||||||| ||||||||||||||||| ||||||   |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21945074 aggagttgtttgcatagcttgcttcatcgacg---cctccattcatgtgtagtatgtgtgctagatccattcttgtttctgttat 21945155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 403
Target Start/End: Original strand, 5812172 - 5812209
Alignment:
Q  366 acctgaatcaaggagttttttgcatagcttgcttcttc 403  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  5812172 acctgaagcaaggagttgtttgcatagcttgcttcttc 5812209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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