View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_high_13 (Length: 393)
Name: NF8477_high_13
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 51109079 - 51108729
Alignment:
| Q |
17 |
atgtttctccaattgttttaaacagcgtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaactagggcttaattatgaac |
116 |
Q |
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| T |
51109079 |
atgtttctccaattgttttaaacagcgtgaggtgttatgctgcacccgttcaggtaatttacaaacttctagtagttgtaactagggcttaattatgaac |
51108980 |
T |
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| Q |
117 |
aaagaaaccttaatgcatgaatgttccttagaaacaatctcttttcaacactatcaaaattgtcatctttgctattgggaatatgttccatggtgatttt |
216 |
Q |
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| T |
51108979 |
aaagaaaccttaatgcatgaatgttccttagaaac----------caacactatcaaaattgtcatctttgctattgggaatatgttgcatggtgatttt |
51108890 |
T |
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| Q |
217 |
ggtattgtgacaatctgcgtctcttggttttattcatgtcgcgcattttgtgtttgtgccttcagtaagcttgagcattatccttcacgttatgtgtttg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51108889 |
ggtattgtgacaatctgcgtctcttggttttattcatgtcgcgcattttgtgtttgtgccttcagtaagcttgagcattatccttcacgttatgtgtttg |
51108790 |
T |
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| Q |
317 |
gtagctttgctatgtattggtggtgttggttgatgatgtttttctgtgttttctctttcat |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51108789 |
gtagctttgctatgtattggtggtgttggttgatgatgtttttctgtgttttctctttcat |
51108729 |
T |
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