View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_high_2 (Length: 565)
Name: NF8477_high_2
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_high_2 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 346 - 565
Target Start/End: Original strand, 51728383 - 51728602
Alignment:
| Q |
346 |
tgaaaggagaacatacttatatttttgttataatttcagtattaattatgcagtggctactataatgattataagctatgtatccaatccttcttcttat |
445 |
Q |
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| T |
51728383 |
tgaaaggagaacatacttatatttttgttataattttactattaattatgcagtggctactataatgattataagctatgtatccaatccttcttcttat |
51728482 |
T |
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| Q |
446 |
agtcttgactagtgtagggtccaaatgcttcggctatccagttctttctccatgaactccatccaagatcattacatatttcatcactatggttaatgct |
545 |
Q |
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| T |
51728483 |
agtcttgactaatatagggtccaaatgcttcggctatccagttctttctccatgaactccatccaagatcattacatatttcatcactatggttaatgct |
51728582 |
T |
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| Q |
546 |
atatgttgaaatgcagtgtc |
565 |
Q |
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|||||||||||||||||||| |
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| T |
51728583 |
atatgttgaaatgcagtgtc |
51728602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 51728089 - 51728298
Alignment:
| Q |
20 |
tgaggcaccgtcactttagatctggaacgtaccgaaattacaaacacatccaaagtctatcttttattagacattttgatctttgtacgtatctgttttc |
119 |
Q |
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| T |
51728089 |
tgaggcactgtcactttagatctggaacgtaccgaaattacaaacacatccaaagtctatcttttattagacattttaatctttgtacgtatctgttttc |
51728188 |
T |
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| Q |
120 |
tggtagttaatcaagtcttgaaatttgttttcattggtcaacatagtccataaaatcactcacaaaaaagatattatgcatgaattttgctatttcaata |
219 |
Q |
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| T |
51728189 |
aggtagtcaatcaagtcttgaaattcgttttcattggtcaacatagtccataaaatcactcacaaaaaagatattaggcatgaattttgctatttcaata |
51728288 |
T |
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| Q |
220 |
catttaatga |
229 |
Q |
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| T |
51728289 |
catttaatga |
51728298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 484 - 565
Target Start/End: Original strand, 51723286 - 51723367
Alignment:
| Q |
484 |
cagttctttctccatgaactccatccaagatcattacatatttcatcactatggttaatgctatatgttgaaatgcagtgtc |
565 |
Q |
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| T |
51723286 |
cagttcttcctccatgaactccatccaagatcattacatatttcatcactatggttgatgcaatatgttgagatgcagtgtc |
51723367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 51728327 - 51728389
Alignment:
| Q |
234 |
caccaaaatctctttttgattaacatggctataaacctattcatgacttgagtgtatgaaagg |
296 |
Q |
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| T |
51728327 |
caccaaaatctctttttgattagcatggctataaacctattcatgacttgagtgtatgaaagg |
51728389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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