View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_high_20 (Length: 348)
Name: NF8477_high_20
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 31524967 - 31524673
Alignment:
| Q |
1 |
cattgatattagtttaacctatctgtttgattctgcaggtgttactctatgaatcattttgtgctttgacattggggaagaagactacctctgtggtgtt |
100 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31524967 |
cattgatattagtttaatctatctgtttgattctgcagttgttactctatgaatcattttgtgctttgacattggggaagaagactgcctctgtggtgtt |
31524868 |
T |
|
| Q |
101 |
gattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcatatggttgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31524867 |
gattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcgtatggttgaa |
31524768 |
T |
|
| Q |
201 |
gcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactctacctagaagtcagacgctcgtctg |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| |
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| T |
31524767 |
gcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgatacaatctacctagaagtcagacgcccgtctg |
31524673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 137
Target Start/End: Complemental strand, 26627891 - 26627855
Alignment:
| Q |
101 |
gattgatgagtgtggaaacaagtggaattgtatcact |
137 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
26627891 |
gattgatgaatgtggaaacaagtggaattgtatcact |
26627855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 33366534 - 33366821
Alignment:
| Q |
1 |
cattgatattagtttaacctatctgtttgattctgcaggtgttactctatgaatcattttgtgctttgacattggggaagaagactacctctgtggtgtt |
100 |
Q |
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||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33366534 |
cattgatattagtttaatctatctgtttgattctgtagttgttactctatgaatcattttgtgctttgacattggggaagaagactgcctctgtggtgtt |
33366633 |
T |
|
| Q |
101 |
gattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcatatggttgaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |
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| T |
33366634 |
gattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccgcatcaaaattggagggggttggaagcgtatggttgaa |
33366733 |
T |
|
| Q |
201 |
gcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactctacctagaagtcagacgc |
288 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33366734 |
gcacgtaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgatacactctacctagaagtcagacgc |
33366821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 49194924 - 49194637
Alignment:
| Q |
1 |
cattgatattagtttaacctatctgtttgattctgcaggtgttactctatgaatcattttgtgctttgacattggggaagaagactacctctgtggtgtt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
49194924 |
cattgatattagtttaatctatctgtttgattctgtagttgttactctatgaatcattttgtgctttgacattggggaagaagactgcctctgtggtgtt |
49194825 |
T |
|
| Q |
101 |
gattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcatatggttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||| |
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| T |
49194824 |
gattgatgagtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgcctcatcaaaattggagggggttggaagcgtatgtttgaa |
49194725 |
T |
|
| Q |
201 |
gcacgcaacataccaataggtgtaagtaacgaagatcggtgctccaagggttgggaacaatgacacactctacctagaagtcagacgc |
288 |
Q |
| |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
49194724 |
gcacgtaacataccaataggtgtaagtaacgaagttcggtgctccaagggttgggaacaatgatacattctacctagaagtcagacgc |
49194637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 39334610 - 39334573
Alignment:
| Q |
100 |
tgattgatgagtgtggaaacaagtggaattgtatcact |
137 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
39334610 |
tgattgatgactgtggaaacaagtggaattgtatcact |
39334573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 9 - 222
Target Start/End: Original strand, 41436949 - 41437162
Alignment:
| Q |
9 |
ttagtttaacctatctgtttgattctgcaggtgttactctatgaatcattttgtgctttgacattggggaagaagactacctctgtggtgttgattgatg |
108 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||| |||| |||||||||| |||||| ||||| |||||||||||||| || ||||||||||||| |
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| T |
41436949 |
ttagtttaatctctctgtttgattctgcatatgttaccatatggatcattttgtcatttgactttgggcaagaagactacctccgttgtgttgattgatg |
41437048 |
T |
|
| Q |
109 |
agtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcatatggttgaagcacgcaa |
208 |
Q |
| |
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| ||||||||||| ||||| ||||||||| | ||| | |||| | ||||||||||||| ||||||| ||||||||||||| |||| ||||||| ||||| |
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| T |
41437049 |
actgtggaaacaaatggaactgtatcactatattcagtaaacagacacatcgccacattaaaattgacgggggttggaagcgtatgcttgaagcgcgcaa |
41437148 |
T |
|
| Q |
209 |
cataccaataggtg |
222 |
Q |
| |
|
||| ||||||||| |
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|
| T |
41437149 |
catttcaataggtg |
41437162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 9 - 222
Target Start/End: Complemental strand, 42934240 - 42934027
Alignment:
| Q |
9 |
ttagtttaacctatctgtttgattctgcaggtgttactctatgaatcattttgtgctttgacattggggaagaagactacctctgtggtgttgattgatg |
108 |
Q |
| |
|
||||||||| || ||||||||||| |||| |||||| |||| |||||||||| |||||| ||||| |||||||| ||||| || ||||||||||||| |
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|
| T |
42934240 |
ttagtttaatctctctgtttgattatgcatatgttaccatatggatcattttgtcatttgactttgggcaagaagaccacctccgttgtgttgattgatg |
42934141 |
T |
|
| Q |
109 |
agtgtggaaacaagtggaattgtatcactgtgttcgggaaacggccacatcgccacatcaaaattggagggggttggaagcatatggttgaagcacgcaa |
208 |
Q |
| |
|
| ||||||||||| ||||| ||||||||| | ||| | |||| | ||||||||||||| |||||||| ||||||||||||| |||| ||||||| | ||| |
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| T |
42934140 |
actgtggaaacaaatggaactgtatcactatattcagtaaacagacacatcgccacattaaaattggtgggggttggaagcgtatgcttgaagcgctcaa |
42934041 |
T |
|
| Q |
209 |
cataccaataggtg |
222 |
Q |
| |
|
||| |||||||||| |
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|
| T |
42934040 |
cattccaataggtg |
42934027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 28503467 - 28503430
Alignment:
| Q |
100 |
tgattgatgagtgtggaaacaagtggaattgtatcact |
137 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28503467 |
tgattgatgactgtggaaacaagtggaattgtatcact |
28503430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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