View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_high_22 (Length: 341)
Name: NF8477_high_22
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 113 - 323
Target Start/End: Original strand, 31797184 - 31797394
Alignment:
| Q |
113 |
aattggtcatttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagac |
212 |
Q |
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| T |
31797184 |
aattggtcatttgtcatggcacgtttcaatcctgaaacgggggagtatcaaggtgtatgccgagttatgtttgggttcaccgtctctttttacataagac |
31797283 |
T |
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| Q |
213 |
atacaagtagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagatgcagaatcctctagaattttacgagttagta |
312 |
Q |
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| T |
31797284 |
gtacaagtagttttgacaactcctttgaaatattctgagcatgctaatcatgtatccatggtagaagatgcagaatcctctagacttttacgagttagta |
31797383 |
T |
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| Q |
313 |
gtcattactct |
323 |
Q |
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||||||||||| |
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| T |
31797384 |
gtcattactct |
31797394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31797040 - 31797155
Alignment:
| Q |
1 |
gagcagttgataatgcgtttcaaatacagtcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatg |
100 |
Q |
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| T |
31797040 |
gagcagttgataatgcgtttcaaatacagtcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatg |
31797139 |
T |
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| Q |
101 |
catctggtcacaaatt |
116 |
Q |
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| T |
31797140 |
catctggtcacaaatt |
31797155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 120 - 287
Target Start/End: Original strand, 31791048 - 31791214
Alignment:
| Q |
120 |
catttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagacatacaag |
219 |
Q |
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| T |
31791048 |
catttctcatggcatgtttcaatcctgaaactgaagagtatcaaagtgtgtgccgagtaatgtctgggttcacagactctttttacatt-gaggtacaag |
31791146 |
T |
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| Q |
220 |
tagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagatgcagaa |
287 |
Q |
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| T |
31791147 |
tagttttgacatatcctttgaaatattctgggcatgctaatcatgcatctatggtagaagatgcagaa |
31791214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 108
Target Start/End: Original strand, 31789777 - 31789883
Alignment:
| Q |
2 |
agcagttgataatgcgtttcaaatacagtcttgctgatccattgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgc |
101 |
Q |
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| T |
31789777 |
agcagttgatattgtgtttcatatacagtcttgctgatccattgaagtactgtttgcaggttactgggtttccctctccgcctaagacgaaagtgtatgc |
31789876 |
T |
|
| Q |
102 |
atctggt |
108 |
Q |
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||||||| |
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| T |
31789877 |
atctggt |
31789883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 31799810 - 31799879
Alignment:
| Q |
217 |
aagtagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccatggtagaagatgcaga |
286 |
Q |
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| T |
31799810 |
aagtagttttgacatatcctttaaaatactatgggcatgttaattatgtatctgtgttagaagatgcaga |
31799879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 31804266 - 31804302
Alignment:
| Q |
80 |
tgcctaagacgaaagtgtatgcatctggtcacaaatt |
116 |
Q |
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| T |
31804266 |
tgcctaagaagaaagtgtatgcatctggtcaccaatt |
31804302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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