View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_high_28 (Length: 321)
Name: NF8477_high_28
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 311
Target Start/End: Original strand, 7292200 - 7292494
Alignment:
| Q |
17 |
acaattgaggtgacagtgtttgtcttcaattgtactacgttttcacttgtttagattgcatagttttcttctcaaatcttatacatggaaaacactttct |
116 |
Q |
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| T |
7292200 |
acaattgaggtgacagtgtttgtcttcacttgtactacgttttcacttgtttagattgcatagttttcttctcaaatcttataaatggacaacactttct |
7292299 |
T |
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| Q |
117 |
taaccttgttgttgttcttgttcttcttttgctttctgcaccaccccgtttctgcatcaaatctacataaaatcaagcaactaaaatcaaatcatctttc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
7292300 |
taaccttgttgttgttcttgttcttcttttgctttctgcaccaccccgtttctgcatcaaatctacacaaaatcaagcaactaaactcaaatcatctttc |
7292399 |
T |
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| Q |
217 |
tcaactcacatcatcttcaccaatcaaatattttgaggtaacaaaaccaattaaactcccaaaagcatcaaaaccatgttcataccacattcttc |
311 |
Q |
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| T |
7292400 |
tcaactcacatcatcttcaccaatcaaatattttgaggtaacaaaaccaattaaactcccaaaagcatcaaaaccatgttcataccacattcttc |
7292494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 63 - 273
Target Start/End: Original strand, 7288500 - 7288707
Alignment:
| Q |
63 |
ttgtttagattgcatagttttcttctcaaatcttatacatggaaaacactttcttaaccttgttgttgttcttgttcttcttttgctttctgcaccaccc |
162 |
Q |
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||||| ||||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||| |||||| | |||||||||||||||||| |
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| T |
7288500 |
ttgttaagattgcatagctttcttctcaaatcttaaacatggacaacggtttcttaaccttgttcttgttcct---------ttgctttctgcaccaccc |
7288590 |
T |
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| Q |
163 |
cgtttctgcatcaaatctacataaaatcaagcaactaaaatcaaatcatctttctcaactcacatc------atcttcaccaatcaaatattttgaggta |
256 |
Q |
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| T |
7288591 |
catttctgcatcaaatctacacaaactcaaacaactaaaagcaaatcatctttctcaaccctcatcatcactatcatcaccaaccaaatactttgaggta |
7288690 |
T |
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| Q |
257 |
acaaaaccaattaaact |
273 |
Q |
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||||||||||||||||| |
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| T |
7288691 |
acaaaaccaattaaact |
7288707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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