View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8477_high_33 (Length: 301)
Name: NF8477_high_33
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_high_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 10597963 - 10597699
Alignment:
| Q |
20 |
agctccttcaatgcatgcatatcagaatctaacccttcacttgcagaattgtcactgatatcatcattgttagctcccacaggtgattctttcaaagcag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
10597963 |
agctccttcaatgcatgcatatcagaatctaacccttcacttgcagaattgtcactgatattatcatcgttagctcccacaggtgagtctttcaaagcag |
10597864 |
T |
|
| Q |
120 |
tcgtatcaagtttatcaaccacaataggaatgtcactgacctctgattttgatttgcattctgaatccgttttgtcagaaaaattacttgtggaatccaa |
219 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||| || || ||||||||||||| | |
|
|
| T |
10597863 |
tggtatcaagtttatcaaccacaataggaatgtcgatgacctctgactttgatttgcattccaaatccgttttgtcaacaagatcacttgtggaatccga |
10597764 |
T |
|
| Q |
220 |
tgcatcagcagcaattacaggactataatcttcgttgattaatccatttggtagcattgtagtct |
284 |
Q |
| |
|
|||||||||||| ||||||||||| ||| || |||||||||||||||||||||||||| |||| |
|
|
| T |
10597763 |
tgcatcagcagccattacaggactgctatcctcattgattaatccatttggtagcattgtggtct |
10597699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 53388592 - 53388427
Alignment:
| Q |
20 |
agctccttcaatgcatgcatatcagaatctaacccttcacttgcagaattgtcactgatatcatcattgttagctcccacaggtgattctttcaaagcag |
119 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
53388592 |
agctcctacaatgcatgcatatcagaatctaacccttcacttgaagaatcatcactaatatcatcattgtttgctcccacgggtaattctttcaaagcag |
53388493 |
T |
|
| Q |
120 |
tcgtatcaagtttatcaaccacaataggaatgtcactgacctctgattttgatttgcattctgaat |
185 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
53388492 |
tcgtatcaaatttatcaaccacaataggaatgtcgctgacctctgattttgatttgcattctgaat |
53388427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 281
Target Start/End: Complemental strand, 53388425 - 53388377
Alignment:
| Q |
233 |
attacaggactataatcttcgttgattaatccatttggtagcattgtag |
281 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||| |||||||||||||| |
|
|
| T |
53388425 |
attacaggactacaatcctcattgattaatccatctggtagcattgtag |
53388377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University