View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_high_37 (Length: 291)
Name: NF8477_high_37
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_high_37 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 9165051 - 9164792
Alignment:
| Q |
18 |
atgaagataatgaagaagggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaatctgatgaagagga |
117 |
Q |
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| T |
9165051 |
atgaagataatgacgaagggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaatctgatgaagagga |
9164952 |
T |
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| Q |
118 |
tgatgatgatgacgatgtatgggttttattcttcctttcacttttaacttctccc-ttcctttccttttacttaatgtcgatttactacaattgtttatt |
216 |
Q |
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| T |
9164951 |
tgctgatgatgacgatgtatgggttttattcttcctttcacttttaacttctccctttcctttccttttacttaatgtcgatttactacaattgtttatt |
9164852 |
T |
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| Q |
217 |
gttcttctttccacttataagatgaaagataagcatagcttagtgcaaactacactccct |
276 |
Q |
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| T |
9164851 |
gttcttcgttccacttataagatgaaagatgagcatagcttagtgcaaactacactccct |
9164792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 9152225 - 9151969
Alignment:
| Q |
18 |
atgaagataatgaagaagggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaatctgatgaagagga |
117 |
Q |
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| T |
9152225 |
atgaagataatgaagaagggggaggtctgagtaaatctgggaaagagctgaagaagctgcttgggcgaactggtggtctaagtgaatctgatgatgatga |
9152126 |
T |
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| Q |
118 |
t---gatgatgatgacgatgtatgggttttattcttcctttcacttttaacttctcccttcctttccttttacttaatgtcgatttactacaattgttta |
214 |
Q |
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| T |
9152125 |
tgacgacgatgacgacgatgtatgggttttattccttctttctcttttcacttctc----cctttccttttacttactttctatttactataatt-tttg |
9152031 |
T |
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| Q |
215 |
ttgttcttctttccacttataagatgaaagataagcatagcttagtgcaaactacactccct |
276 |
Q |
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| T |
9152030 |
ttgttctttgttccacttataagatgaaagataagcatagctcagtgcaaattatactccct |
9151969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 26 - 272
Target Start/End: Original strand, 9179434 - 9179671
Alignment:
| Q |
26 |
aatgaagaag--ggggaggtctgagtaaacctgggaaagagctgaagaagttgcttgggcgaactggtggtccgagtgaatctgatgaagaggatgatga |
123 |
Q |
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| T |
9179434 |
aatgaagaagaagggaaggtctgagtaaatctgggaaagagatgaagaagctgcttggt-gagctggtggtctaagtgaatccgatgcaga------tga |
9179526 |
T |
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| Q |
124 |
tgatgacgatgtatgggttttattcttcctttcacttttaacttctcccttcctttccttttacttaatgtcgatttactacaattgtttattgttcttc |
223 |
Q |
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| T |
9179527 |
cgatgacgacgtatgagttttattccttctttctcttttcatttctccctttcttt----ttacttactttcgatttactacaatattttgttgttcttt |
9179622 |
T |
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| Q |
224 |
tttccacttataagatgaaagataagcatagcttagtgcaaactacact |
272 |
Q |
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| T |
9179623 |
gttccactaataaaatgaacgataagcatagctcaatgcaaattacact |
9179671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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