View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_high_4 (Length: 552)
Name: NF8477_high_4
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 30902227 - 30902778
Alignment:
| Q |
1 |
tcaacactattaccattacaattagcattaacagcaacaacttctacattctcgccgccggcagttttctgttccgtttcaccggcaacttctccggcag |
100 |
Q |
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| T |
30902227 |
tcaacactattaccattacaattagcattaacaacaacaacttctacattctcgccgccggcagttttctgttccgtttcaccggcaacttctccggcag |
30902326 |
T |
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| Q |
101 |
ccgtcggttgataaagcccacatttctgacacctagcaacggcaaacggagcacggcaagaagggcaagaagagtgagacccaagccacgtgtcaacaca |
200 |
Q |
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| T |
30902327 |
ccgtcggttgataaagcccacatttctgacacctagcaacggcaaacggagcacggcaagaagggcaagaagagtgagacccaagccacgtgtcaacaca |
30902426 |
T |
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| Q |
201 |
tgccacgtggaagccatgaccacactgaggaagcacccgaacctcttcaccggcggtgaactccgagatacaaatggcgcactccgatgagacgacccat |
300 |
Q |
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| T |
30902427 |
tgccacgtggaagccatgaccacactgaggaagcacccgaacctcttcaccggcggtgaactccgagatacaaatggcgcactccgatgagacgacccat |
30902526 |
T |
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| Q |
301 |
tttccgggagtgtcgtcgaggtaggtgaatttcggaagtgaattgagaaccttctttttgagacctttgttggccatcgccgtcgccggtgatgctccgg |
400 |
Q |
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| T |
30902527 |
tttccgggagtgtcgtcgaggtaggtgaatttcggaagtgaattgagaaccttctttttgagacctttgttggccaccgccgccgacggtgatgctccgg |
30902626 |
T |
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| Q |
401 |
cgacgggggtacggcggagccaggcgcaacgggcaatggcggtgagacccacgacggagattagagcgcagaggagagcggcgaggatgacgacgaagtc |
500 |
Q |
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| T |
30902627 |
cgacgggggtacggcggagccaggcgcaacgggcaatggcggtgagacccacgacggagattagagcgcagaggagagcggcgaggatgacgacgaagtc |
30902726 |
T |
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| Q |
501 |
ggattctaatgaggcggcggagtccggcggtggtgcggcggaggaaatggat |
552 |
Q |
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| T |
30902727 |
ggattctaatgaggcggcggagtccggcggtggtgcggcggaggaaatggat |
30902778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 157 - 281
Target Start/End: Complemental strand, 9941187 - 9941063
Alignment:
| Q |
157 |
caagaagggcaagaagagtgagacccaagccacgtgtcaacacatgccacgtggaagccatgaccacactgaggaagcacccgaacctcttcaccggcgg |
256 |
Q |
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|||||||| ||||| ||||| ||||||||||| || |||| ||| |||||||| || ||||| |||||||| ||||| || || | ||| || ||||||| |
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| T |
9941187 |
caagaaggacaagatgagtgtgacccaagccatgtatcaatacaagccacgtgaaaaccatgtccacactgtggaagaacacggatctcatcgccggcgg |
9941088 |
T |
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| Q |
257 |
tgaactccgagatacaaatggcgca |
281 |
Q |
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| T |
9941087 |
cgaaatccgagagacaaatcgcgca |
9941063 |
T |
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