View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8477_high_6 (Length: 489)

Name: NF8477_high_6
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8477_high_6
NF8477_high_6
[»] chr6 (4 HSPs)
chr6 (59-439)||(2162128-2162508)
chr6 (59-439)||(2168291-2168671)
chr6 (59-439)||(2179924-2180304)
chr6 (64-439)||(2207160-2207535)
[»] scaffold0286 (1 HSPs)
scaffold0286 (59-439)||(14596-14978)
[»] scaffold0254 (1 HSPs)
scaffold0254 (59-439)||(2026-2408)
[»] chr3 (2 HSPs)
chr3 (58-466)||(27781116-27781522)
chr3 (59-423)||(27785015-27785379)
[»] chr1 (1 HSPs)
chr1 (217-292)||(19488151-19488225)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 59 - 439
Target Start/End: Complemental strand, 2162508 - 2162128
Alignment:
Q  59 aaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatctctatagtattgagcaataactagtggttcaacca 158  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  2162508 aaccattcctccaaagttttgaagtgtttggatctatgtttattgacataatctttaccaccatctctatagtactgagcaatagctagtggttcaacca 2162409  T
Q  159 ttcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaaccatcttttcccaata 258  Q
    |||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  2162408 ttcttctatatgtagttccaccgaagagccagcgattacgaaatgcagcgccttctctttgaggtttcagttcagcttcttcaaccatcttttcccaata 2162309  T
Q  259 aattgtgagctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaagattttttgttttc 358  Q
    | |||||||  ||||||||||   ||||||||||  |||| |      |||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  2162308 atttgtgagtattttatgaaatacaacaacatcatgatcaaactgtgcgttcttgtttttgtagctgtcatagtaccctatgtcaagattttttgttttc 2162209  T
Q  359 attttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttga 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  2162208 attttgtaccattcaagttgcgccatatgtcgcttcatttcattcaatttcttggatggatcaaatgatgtcttcttttga 2162128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 59 - 439
Target Start/End: Complemental strand, 2168671 - 2168291
Alignment:
Q  59 aaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatctctatagtattgagcaataactagtggttcaacca 158  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  2168671 aaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtctctatagtattgagcaatagctagtggttcaacca 2168572  T
Q  159 ttcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaaccatcttttcccaata 258  Q
    ||||||||||||||||||||||||||| |||| ||  |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  2168571 ttcttctatatgtagttccaccgaagatccagcgagtacgaaatgcagcgccttctctttgaggcttcagatcagcttcttcaaccatcttttcccaaaa 2168472  T
Q  259 aattgtga-gctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaagattttttgtttt 357  Q
    || | ||| ||||||||  | |   | |||| |||  ||||| |||   |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  2168471 aaatatgatgcttttta-aataccaatcaacttcataatcagctgatacgttcttgtttttgtagctgtcatagtaccctatgtcaagattttttgtttt 2168373  T
Q  358 cattttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttga 439  Q
    | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  2168372 ctttctgtaccattcaagttgcgccatatgtcgcctcatttcattcagtttcttggatggatcaaatgatgtcttcttttga 2168291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 59 - 439
Target Start/End: Complemental strand, 2180304 - 2179924
Alignment:
Q  59 aaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatctctatagtattgagcaataactagtggttcaacca 158  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  2180304 aaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtctctatagtattgagcaatagctagtggttcaacca 2180205  T
Q  159 ttcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaaccatcttttcccaata 258  Q
    ||||||||||||||||||||||||||| |||| ||  |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  2180204 ttcttctatatgtagttccaccgaagatccagcgagtacgaaatgcagcgccttctctttgaggcttcagatcagcttcttcaaccatcttttcccaaaa 2180105  T
Q  259 aattgtga-gctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaagattttttgtttt 357  Q
    || | ||| ||||||||  | |   | |||| |||  ||||| |||   |||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  2180104 aaatatgatgcttttta-aataccaatcaacttcataatcagctgatacgttcttgtttttgtagctgtcatagtaccctatgtcaagattttttgtttt 2180006  T
Q  358 cattttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttga 439  Q
    | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  2180005 ctttctgtaccattcaagttgcgccatatgtcgcctcatttcattcagtttcttggatggatcaaatgatgtcttcttttga 2179924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 64 - 439
Target Start/End: Complemental strand, 2207535 - 2207160
Alignment:
Q  64 ttcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatctctatagtattgagcaataactagtggttcaaccattctt 163  Q
    |||||||||  |||||||||||||||| |||| |||||| ||||||||||||||||| ||| | ||||||||||||||| ||| ||||||||||||||||    
T  2207535 ttcctccaattttttgaagtgtttggacctttttttattcacataatctttaccaccttctttgtagtattgagcaatagctaatggttcaaccattctt 2207436  T
Q  164 ctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaaccatcttttcccaataaattg 263  Q
    |||||  || |||||||  | |||||   |  | ||||    || |||||| ||| |||||||| |||| | |||||||||||||| ||||||||| |||    
T  2207435 ctataaataattccaccatatagccaacaagtaggaaaaaaggcaccttcttttttaggcttcatttcaacgtcttcaaccatcttctcccaataacttg 2207336  T
Q  264 tgagctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaagattttttgttttcatttt 363  Q
    |||||||||||||||| | ||||||||||  |||||||   | || |||||||||| | ||||||||||||||||||||||||||| |||||||| ||||    
T  2207335 tgagctttttatgaaactcaacaacatcataatcagatatttcgtacatgtttttgtaactgtcatagtaccctatgtcaagatttgttgttttcttttt 2207236  T
Q  364 gtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttga 439  Q
    ||||||||||| ||| || |||  || ||||||||||||| |||| || ||||||| |||| || |||||||||||    
T  2207235 gtaccattcaacttgtgctatacatcccttcatttcattctgtttatttgatggattaaatgatatcttcttttga 2207160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 59 - 439
Target Start/End: Original strand, 14596 - 14978
Alignment:
Q  59 aaccattcctcc-aaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatctctatagtattgagcaataactagtggttcaacc 157  Q
    |||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  14596 aaccattcctcccaaagttttgaagtgtttggatctatgtttattgacataatctttaccaccatctctatagtactgagcaatagctagtggttcaacc 14695  T
Q  158 attcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaaccatcttttcccaat 257  Q
    ||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  14696 attcttctatatgtagttccaccgaagagccagcgattacgaaatgcagcgccttctctttgaggtttcagttcagcttcttcaaccatc-tttcccaat 14794  T
Q  258 aaattgtgagctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaag-attttttgttt 356  Q
    || |||||||  ||||||||||   ||||||||||  |||| |      |||| |||||||| ||||||||||||||||||||||||| |||||||||||    
T  14795 aatttgtgagtattttatgaaatacaacaacatcatgatcaaactgtgcgttcttgtttttgtagctgtcatagtaccctatgtcaagtattttttgttt 14894  T
Q  357 tc-attttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttga 439  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  14895 tctattttgtaccattcaagttgcgccatatgtcgcttcatttcattcaatttcttggatggatcaaatgatgtcttcttttga 14978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 59 - 439
Target Start/End: Original strand, 2026 - 2408
Alignment:
Q  59 aaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatctctatagtattgagcaataactagtggttcaacca 158  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  2026 aaccattcctccaaagctttgaagtgtttggatctttgtttattgatataatctttaccaccgtctctatagtattgagcaatagctagtggttcaacca 2125  T
Q  159 ttcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaaccatcttttccc-aat 257  Q
    |||||||||||||||||||||||||||||||| ||  |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||     
T  2126 ttcttctatatgtagttccaccgaagagccagcgagtacgaaatgcagcgccttctctttgaggcttcagatcagcttcttcaaccatcttttcccaaaa 2225  T
Q  258 aaattgtga-gctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaagattttttgttt 356  Q
    ||||  ||| ||||||||    |   | |||| |||  ||||| |||   |||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  2226 aaataatgatgctttttaaattaccaatcaacttcataatcagctgatacgttcttgtttttgtagctgtcatagtaccctatgtcaagattttttgttt 2325  T
Q  357 tcattttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttga 439  Q
    || || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  2326 tctttctgtaccattcaagttgcgccatatgtcgcctcatttcattcagtttcttggatggatcaaatgatgtcttcttttga 2408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 58 - 466
Target Start/End: Original strand, 27781116 - 27781522
Alignment:
Q  58 caaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatctctatagtattgagcaataactagtggttcaacc 157  Q
    |||||||||||||||   |||||||||||| || ||||  |||| |||||| ||| |||| || | ||||||||||| ||||||| |||| |||||||||    
T  27781116 caaccattcctccaactgtttgaagtgtttagaccttttgttat-gacatagtctataccgccttttctatagtattcagcaatagctagaggttcaacc 27781214  T
Q  158 attcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaaccatcttttcccaat 257  Q
    ||||| || || ||||| || ||  | | |||  |   |||||| || || |||||| ||||||| ||||  | | |||||||||||||||| ||||| |    
T  27781215 attctcctgta-gtagtcccgccatataaccaacgggtacgaaaagctgcaccttctttttgaggtttcatctgaacttcttcaaccatcttctcccagt 27781313  T
Q  258 aaattgtgagctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaagattttttgtttt 357  Q
    |||  |||||||| ||||| || | |||||| |||   ||    |   ||||||| |||||| ||||||||||||||||||| |   |||| || |||      
T  27781314 aaacggtgagcttgttatggaattgaacaacttcatggtcgacaggtgtgttcatatttttgtagctgtcatagtaccctatttgttgattcttagttgc 27781413  T
Q  358 cattttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaataatgtcttcttttgatggatggatagttcttct 457  Q
    ||||||| ||||||||||||| |||||||||  |||||  ||||||| |||||||||||||| |||  || ||||||| || |||||| ||| ||||||     
T  27781414 cattttgaaccattcaagttgggccatatgtaccttcacgtcattcaatttcttggatggataaaacgatatcttcttctggtggatgaatatttcttcg 27781513  T
Q  458 agtcttttt 466  Q
    ||| |||||    
T  27781514 agttttttt 27781522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 59 - 423
Target Start/End: Original strand, 27785015 - 27785379
Alignment:
Q  59 aaccattcctccaaggttttgaagtgtttggatctttgtttattgacataatctttaccaccatctctatagtattgagcaataactagtggttcaacca 158  Q
    ||||| ||||||||   |||||| |||| ||| ||||  ||||| | ||| ||||||||||| || || |||||||  |||||   ||||||||||||||    
T  27785015 aaccactcctccaactgtttgaaatgttcggaccttttgttattaatatagtctttaccaccttcactgtagtatttggcaatggatagtggttcaacca 27785114  T
Q  159 ttcttctatatgtagttccaccgaagagccagtgataacgaaacgcagcgccttctctttgaggcttcagttcagcttcttcaaccatcttttcccaata 258  Q
    |||| || || ||||| ||  || | | |||  |   |||||| || || |||||| ||||||||||||  |||||||||||||||||||| ||||||||    
T  27785115 ttctcctgtaagtagtccctgcgtataaccaacgggtacgaaaagctgcaccttctttttgaggcttcatctcagcttcttcaaccatcttctcccaata 27785214  T
Q  259 aattgtgagctttttatgaaagttaacaacatcaatatcagatgacttgttcatgtttttgaagctgtcatagtaccctatgtcaagattttttgttttc 358  Q
    ||  |||||| ||||||| || | |  |||||||   |||   |    |||||||||||||||||||||||| |||||||| |    ||| || | ||||    
T  27785215 aaaggtgagccttttatggaattgattaacatcatagtcatcgggaaagttcatgtttttgaagctgtcataataccctatttgttcattcttagatttc 27785314  T
Q  359 attttgtaccattcaagttgcgccatatgtcgcttcatttcattcagtttcttggatggatcaaa 423  Q
     ||||||||||||||||||| |||||||    |||| | |||||||  ||||| |||||||||||    
T  27785315 tttttgtaccattcaagttgggccatatccaccttcctgtcattcaacttctttgatggatcaaa 27785379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 292
Target Start/End: Original strand, 19488151 - 19488225
Alignment:
Q  217 ttgaggcttcagttcagcttcttcaaccatcttttcccaataaattgtgagctttttatgaaagttaacaacatca 292  Q
    ||||||||||| |||| |||||||||| || |||||||||||||||||||||||||||||||| | ||||||||||    
T  19488151 ttgaggcttcatttcaacttcttcaactat-ttttcccaataaattgtgagctttttatgaaactcaacaacatca 19488225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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