View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_10 (Length: 448)
Name: NF8477_low_10
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_10 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 50 - 448
Target Start/End: Complemental strand, 49461877 - 49461462
Alignment:
| Q |
50 |
tcctgttatagttatatacttgccataatcaacttgatatgaaggtttcagcagtttcaacaagatttattgtgttttagcatagttgtcattctatgtg |
149 |
Q |
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| T |
49461877 |
tcctgttatagttatatacttgccataatcaacttgatatgaaggtttcagcagtttcaacaagatttgttgtgttttagcatagttgtcattctatgtg |
49461778 |
T |
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| Q |
150 |
ggaagaaggtatgtagaggtctgagtttcttggttcatgtaaaattctctaaatttgtaaagaaaatggtaatgattgaaagatcaatggcttatataaa |
249 |
Q |
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| T |
49461777 |
ggaagaaggtatgtagaggtctgagtttcttggttcatgtaaaattctctaaatttgtaaagaaaattgtaatgattgaaagatcaatggcttgtatgaa |
49461678 |
T |
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| Q |
250 |
aatatgatcggtgtgttcccaagtcatagttcaactagcaaatgttgaaattgttagactggataccgtgaccc---------------atccctcattt |
334 |
Q |
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| T |
49461677 |
aatatgatcggtgtgttcccaagtcatagttcaactagcaaatgttgaaattgttagactggataccgtgactcaggttcaaacatgggatccctcagtt |
49461578 |
T |
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| Q |
335 |
gtttgagttttccattggttattgtcattccatttatctac--aaaaagaattgtgatagttgcatgtgatgccaaatctacttgtagattgttatacaa |
432 |
Q |
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| T |
49461577 |
gtctgagttttcaattggttattgtcattccatttatctacaaaaaaaaaattgtgatagttgcatttgatgccaaatctacttgtagaatgttatacaa |
49461478 |
T |
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| Q |
433 |
ctgttgcagtttgtct |
448 |
Q |
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| T |
49461477 |
ctgttgcagtttgtct |
49461462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 53 - 285
Target Start/End: Complemental strand, 42175963 - 42175728
Alignment:
| Q |
53 |
tgttatagttatatacttgccataatcaacttgatatgaaggtt----tcagcagtttcaacaagatttattgtgtt--ttagcatagttgtcattctat |
146 |
Q |
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| T |
42175963 |
tgttagagttagatactagccataaacaacttgatatgcaggttctgttccgcagtttcagcaagacttgttctgtgaattagtatagttggcgctctat |
42175864 |
T |
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| Q |
147 |
gtgggaagaaggtatgtagaggtctgagtttcttggttcatgtaaaattctctaaatttgtaaagaaaatggtaatgattgaaagatcaatggcttatat |
246 |
Q |
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| T |
42175863 |
gtgggaagaaggtatgtaaag-tcggggtttcctcgtttttgtaaaattctctaaattt--aaagaaaattgtaatgattgaaaaatcaagaacttatat |
42175767 |
T |
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| Q |
247 |
aaaaatatgatcggtgtgttcccaagtcatagttcaact |
285 |
Q |
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| T |
42175766 |
aaaaatgtgatcgttgctttcacaaatcctagttcaact |
42175728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 11011980 - 11012024
Alignment:
| Q |
269 |
caagtcatagttcaactagcaaatgttgaaattgttagactggat |
313 |
Q |
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| T |
11011980 |
caagtcctagctcaactagcaaatgctgaaattgttaggctggat |
11012024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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