View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_11 (Length: 448)
Name: NF8477_low_11
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 2794540 - 2794954
Alignment:
| Q |
18 |
cgagggatcaagaagagagggataaaattgaggaagagatgaaggggtcgaatttggagtcaattttggaggagttatatgttgtgaaagcctctactat |
117 |
Q |
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| T |
2794540 |
cgagggatcaagaagagagggataaaattgaggaagagatgaaggggtcgaatttggagtcaattttggaggagttatatgctgtgaaagcctctactat |
2794639 |
T |
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| Q |
118 |
agagagggagaagaacttggagaagagtataaggtacgaggctcgaaggttgaaagacggggacatggacattgataggggaactggtgatggagttggg |
217 |
Q |
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| T |
2794640 |
agagagggagaagaacttggagaagagtataaggtacgaggctcgaaggttgaaagacggggacatggacattgataggggaactggtgatggagttggg |
2794739 |
T |
|
| Q |
218 |
gaaaatgggggtcaatgccggatacttgatttggataaccttgcttttgaacaaggtggtttgtttatgacaaagggaaaatgtgatcttcctgatgggt |
317 |
Q |
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| T |
2794740 |
gaaaatgggggtcaacgccggatgcttgatttggataaccttgcttttgaacaaggtggtttgtttatgacaaagggaaaatgtgatcttcctgatgggt |
2794839 |
T |
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| Q |
318 |
cttacaggcttccgagaaaaggttatcaagaaattcatgtgcctgccttgaaggctaaacccattgatcctaatgagaaacttgtgaatattggttatat |
417 |
Q |
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| T |
2794840 |
cttacaggcttccgagaaaaggttatcaagaaattcatgtgcctgccttgaaggctaaacccattgatcctaatgagaaacttgtgaatattggttatat |
2794939 |
T |
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| Q |
418 |
gccggattgggcaca |
432 |
Q |
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| T |
2794940 |
gccggattgggcaca |
2794954 |
T |
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Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 242 - 405
Target Start/End: Original strand, 29262277 - 29262440
Alignment:
| Q |
242 |
cttgatttggataaccttgcttttgaacaaggtggtttgtttatgacaaagggaaaatgtgatcttcctgatgggtcttacaggcttc-cgagaaaaggt |
340 |
Q |
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|||||||| |||||||| |||||||||||||||| || |||||| ||||| ||||||||| ||||||||||||||||| |||| || ||| ||||||| |
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| T |
29262277 |
cttgatttagataacctcacttttgaacaaggtgggttatttatggcaaagaaaaaatgtgaccttcctgatgggtcttataggcatctcga-aaaaggt |
29262375 |
T |
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| Q |
341 |
tatcaagaaattcatgtgcctgccttgaaggctaaacccattgatcctaatgagaaacttgtgaa |
405 |
Q |
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||| |||| |||||||| || || ||||||||||||||| |||||||||||||||| ||| |||| |
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| T |
29262376 |
tatgaagagattcatgttccagcattgaaggctaaaccccttgatcctaatgagaagcttttgaa |
29262440 |
T |
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