View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8477_low_12 (Length: 424)

Name: NF8477_low_12
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8477_low_12
NF8477_low_12
[»] chr6 (9 HSPs)
chr6 (329-412)||(14044770-14044853)
chr6 (320-399)||(14020524-14020607)
chr6 (95-154)||(13475232-13475291)
chr6 (39-87)||(14081904-14081952)
chr6 (26-92)||(13475058-13475124)
chr6 (95-144)||(14081789-14081838)
chr6 (260-295)||(14044861-14044896)
chr6 (325-355)||(13475564-13475594)
chr6 (384-412)||(14044692-14044720)
[»] chr8 (5 HSPs)
chr8 (26-97)||(8754138-8754209)
chr8 (95-154)||(10507392-10507451)
chr8 (325-377)||(10507760-10507812)
chr8 (95-154)||(8753977-8754036)
chr8 (44-97)||(10507236-10507289)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 329 - 412
Target Start/End: Complemental strand, 14044853 - 14044770
Alignment:
Q  329 aaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatct 412  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14044853 aaatgtatttgtctaacgaaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatct 14044770  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 14020607 - 14020524
Alignment:
Q  320 gagctcaaaaaatgtatttgtctaacggaatttcagcacatgactgctgg----aattaaaatgtatttatgttcacatttcaa 399  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||    ||||||||||||||||||||||||||||||    
T  14020607 gagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtggaattaattaaaatgtatttatgttcacatttcaa 14020524  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 13475232 - 13475291
Alignment:
Q  95 taaagcttagtgggctttcaaatgcattgtaaataacacacagaagttccagtttcatag 154  Q
    |||||||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||    
T  13475232 taaagcttagtgggctttcacatgcattttaaataacatacagaagttccggtttcatag 13475291  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 14081952 - 14081904
Alignment:
Q  39 tagtcagtgagaactcattcaccaacagaaacatgacttcactgaattt 87  Q
    ||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  14081952 tagtcagtgagaactcattcatcaacagaaacatgacttcattgaattt 14081904  T

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Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 13475058 - 13475124
Alignment:
Q  26 tatttctggaaagtagtcagtgagaactcattcaccaacagaaacatgacttcactgaattttttac 92  Q
    |||||||| ||||||||||||| ||||| ||||| || | |||| ||||||||||||||||||||||    
T  13475058 tatttctgcaaagtagtcagtgtgaacttattcatcatcggaaaaatgacttcactgaattttttac 13475124  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 14081838 - 14081789
Alignment:
Q  95 taaagcttagtgggctttcaaatgcattgtaaataacacacagaagttcc 144  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  14081838 taaagcttagagggctttcacatgcattgtaaataacatacagaagttcc 14081789  T

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Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 295
Target Start/End: Complemental strand, 14044896 - 14044861
Alignment:
Q  260 attcagttatgttccagctagttctccatcatccgt 295  Q
    ||||||||||||||||||||||||||||||||||||    
T  14044896 attcagttatgttccagctagttctccatcatccgt 14044861  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 355
Target Start/End: Original strand, 13475564 - 13475594
Alignment:
Q  325 caaaaaatgtatttgtctaacggaatttcag 355  Q
    |||||||||||||||||||||||||||||||    
T  13475564 caaaaaatgtatttgtctaacggaatttcag 13475594  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 412
Target Start/End: Complemental strand, 14044720 - 14044692
Alignment:
Q  384 tatgttcacatttcaataaaaatttatct 412  Q
    |||||||||||||||||||||||||||||    
T  14044720 tatgttcacatttcaataaaaatttatct 14044692  T

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Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 8754209 - 8754138
Alignment:
Q  26 tatttctggaaagtagtcagtgagaactcattcaccaacagaaacatgacttcactgaattttttactgtaa 97  Q
    |||||||| ||| ||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||    
T  8754209 tatttctgcaaactagtcagtgggaactcattcatcaacaaaaacatgacttcactgaattttttgctgtaa 8754138  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 10507392 - 10507451
Alignment:
Q  95 taaagcttagtgggctttcaaatgcattgtaaataacacacagaagttccagtttcatag 154  Q
    |||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||||    
T  10507392 taaagcttagtgggctttcacatgcattgtaaataacatactgaagtttcagtttcatag 10507451  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 10507760 - 10507812
Alignment:
Q  325 caaaaaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaa 377  Q
    ||||||||||||||||||| | ||||||||||||||||| | |||||||||||    
T  10507760 caaaaaatgtatttgtctatctgaatttcagcacatgacaggtggaattaaaa 10507812  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 8754036 - 8753977
Alignment:
Q  95 taaagcttagtgggctttcaaatgcattgtaaataacacacagaagttccagtttcatag 154  Q
    |||| |||||||||| |||| ||||||||||||||||| || |||||| |||||||||||    
T  8754036 taaaacttagtgggcattcatatgcattgtaaataacatactgaagtttcagtttcatag 8753977  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 10507236 - 10507289
Alignment:
Q  44 agtgagaactcattcaccaacagaaacatgacttcactgaattttttactgtaa 97  Q
    |||| ||||||||||| ||||  |||||||| ||||||||||||||||||||||    
T  10507236 agtgggaactcattcatcaacgaaaacatgatttcactgaattttttactgtaa 10507289  T

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