View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8477_low_13 (Length: 419)
Name: NF8477_low_13
Description: NF8477
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8477_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 5397141 - 5396779
Alignment:
| Q |
12 |
cagggcccggctaagcatggcatcttcatttgtttgccttcaaataaactaaccatatgatcaagtgaaaggnnnnnnnn-ttaatgtctattacgagga |
110 |
Q |
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| T |
5397141 |
caggccccagctaagcatggcatcttcatttgtttgccttcaaataaactaaccatatgatcaagtgaaagcaaaaaaaaattaatgtctattacgagga |
5397042 |
T |
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| Q |
111 |
tttaaaaatttgcaaccccatgatcacgtgtgtaggtgcaaatctttgnnnnnnnnn-aaaagtcaagctatccaatttaaattgacatcgaaaagaatc |
209 |
Q |
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| T |
5397041 |
tttaaaaatttgcaaccccatgatcacgtgtgtaggtgcaaatctttgttttttttttaaaagtcaagctatccaatccaaattgacatcgaaaagaatc |
5396942 |
T |
|
| Q |
210 |
gaacctaaatccttaagaggagcgcaaactttcaagccaaccctaaaaggacagtccaagtgggttgcgttggactaaatcttaaatagaaagatttgaa |
309 |
Q |
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||||||||||| |||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
5396941 |
gaacctaaatctttaagaggagcgcaaattttcaagccaacgctaaaaggccagtccaagtgggttgcgtcggaccaaatcttaaatagaaagatttgaa |
5396842 |
T |
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| Q |
310 |
ttggaaaaaatcgctcacatggccaaagcttgtgtaaggaaaactcaacaaaaacacatcaaa |
372 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5396841 |
ttggaaaaaatcactcacatggccaaagcttgtgtaaggaaaactcaacaaaaacacatcaaa |
5396779 |
T |
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